Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00009091 |
| length | 927 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 6 |
| gene id | XLOC_004574 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 13244149 ~ 13263658 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0070588 | calcium ion transmembrane transport | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0006816 | calcium ion transport | biological_process |
| GO:0006874 | cellular calcium ion homeostasis | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0033017 | sarcoplasmic reticulum membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005388 | calcium transmembrane transporter activity, phosphorylative mechanism | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0008553 | proton-exporting ATPase activity, phosphorylative mechanism | molecular_function |
| GO:0016887 | ATPase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-041229-2 | Predicted to enable P-type calcium transporter activity. Predicted to be involved in calcium ion transmembrane transport and cellular calcium ion homeostasis. Predicted to act upstream of or within calcium ion transport. Predicted to be located in membrane and sarcoplasmic reticulum. Predicted to be active in sarcoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in gill. Human ortholog(s) of this gene implicated in Brody myopathy. Orthologous to human ATP2A1 (ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1). |
| ensembl_id | ENSDART00000144542 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00009084 | lncRNA | upstream | 160745 | 13094316 ~ 13095670 (+) | True | XLOC_004570 |
| TCONS_00010724 | lncRNA | upstream | 840580 | 12415256 ~ 12415835 (+) | True | XLOC_004568 |
| TCONS_00009075 | lncRNA | upstream | 1893354 | 11359201 ~ 11363061 (+) | True | XLOC_004564 |
| TCONS_00009063 | lncRNA | upstream | 2807584 | 10448242 ~ 10448831 (+) | True | XLOC_004558 |
| TCONS_00009058 | lncRNA | upstream | 3088938 | 10163641 ~ 10167477 (+) | True | XLOC_004554 |
| TCONS_00009098 | lncRNA | downstream | 90516 | 13352261 ~ 13355576 (+) | True | XLOC_004577 |
| TCONS_00009105 | lncRNA | downstream | 393965 | 13655710 ~ 13721912 (+) | True | XLOC_004580 |
| TCONS_00009107 | lncRNA | downstream | 478471 | 13740216 ~ 13742676 (+) | True | XLOC_004582 |
| TCONS_00010898 | lncRNA | downstream | 825670 | 14087415 ~ 14130458 (+) | False | XLOC_004585 |
| TCONS_00010899 | lncRNA | downstream | 1479407 | 14741152 ~ 14744702 (+) | False | XLOC_004589 |
| TCONS_00009088 | mRNA | upstream | 32966 | 13205955 ~ 13223449 (+) | True | XLOC_004573 |
| TCONS_00009087 | mRNA | upstream | 79497 | 13164706 ~ 13176918 (+) | True | XLOC_004572 |
| TCONS_00009085 | mRNA | upstream | 92166 | 13118540 ~ 13164249 (+) | False | XLOC_004571 |
| TCONS_00009086 | mRNA | upstream | 126312 | 13118573 ~ 13130103 (+) | True | XLOC_004571 |
| TCONS_00009083 | mRNA | upstream | 150198 | 13091876 ~ 13106217 (+) | False | XLOC_004570 |
| TCONS_00009092 | mRNA | downstream | 21052 | 13282797 ~ 13306883 (+) | False | XLOC_004575 |
| TCONS_00009093 | mRNA | downstream | 21062 | 13282807 ~ 13292767 (+) | False | XLOC_004575 |
| TCONS_00009095 | mRNA | downstream | 57387 | 13319132 ~ 13331980 (+) | True | XLOC_004576 |
| TCONS_00009096 | mRNA | downstream | 83151 | 13344896 ~ 13389784 (+) | False | XLOC_004577 |
| TCONS_00009097 | mRNA | downstream | 87173 | 13348918 ~ 13390841 (+) | False | XLOC_004577 |
| TCONS_00009079 | other | upstream | 642964 | 12613335 ~ 12613451 (+) | True | XLOC_004569 |
| TCONS_00009076 | other | upstream | 1612744 | 11643551 ~ 11643671 (+) | True | XLOC_004565 |
| TCONS_00009060 | other | upstream | 3045367 | 10210932 ~ 10211048 (+) | True | XLOC_004556 |
| TCONS_00009055 | other | upstream | 3110604 | 10134366 ~ 10145811 (+) | False | XLOC_004553 |
| TCONS_00009019 | other | upstream | 5523765 | 7732534 ~ 7732650 (+) | True | XLOC_004523 |
| TCONS_00009094 | other | downstream | 22029 | 13283774 ~ 13292767 (+) | True | XLOC_004575 |
| TCONS_00009101 | other | downstream | 195492 | 13457237 ~ 13457356 (+) | True | XLOC_004579 |
| TCONS_00009106 | other | downstream | 396277 | 13658022 ~ 13658144 (+) | True | XLOC_004581 |
| TCONS_00009115 | other | downstream | 840359 | 14102104 ~ 14103806 (+) | True | XLOC_004585 |
| TCONS_00009129 | other | downstream | 2119949 | 15381694 ~ 15381814 (+) | True | XLOC_004597 |
