RNA id: TCONS_00009096


Basic Information

Item Value
RNA id TCONS_00009096
length 4230
RNA type mRNA
GC content 0.48
exon number 31
gene id XLOC_004577
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 13344896 ~ 13390841 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTCgcaatctgattggctgcaaTACACATCGCGTCCTGAAAGAGCCGATGGGCTGCATTATAACATAAGCATTTTTACCGCTGTAAACATTGTTTAAACGTTTTAAATAGAATAGTTGATTTAGTTCTCAAGCGTTAGCTGAGCTATTTTAAAGCTTTCTTAAAGATGTCTTTCCATGCTGGCCGTGGATGCCCGAGGGGTAGACTACCCGCTCCGGGTCAAATATATCATCCTGCTTCCCCACGATATCACTACGACCCTTCCGCTGCTCCCGGACCTGTCTATAACCCCCAGGGCGGCAGCAGCTACATGCCACCTCATCCTGACTTCATGTCGTTCCACTTCCCTCCACCATCACAGGCTTCCAACACCCTGCCTCAGTGCCCCATACGTCCACCAGTCTTCACAGAACCACCCCCTTTTCCACCACCTCCTCCTCACAGCTCAGATGGCTCGACTCCAATGCCGATTCAGAACTCTTATCCTTACATGATGCCCAATATCCCCCCTCCACCCCTGCCACCTATGCCACCCTCAGTTCCACCCACTATGCCCTACCCTCCAACATACCCTATGAGCTACCCTCCACAACCCCAGCTTCCCCCTCCACCCAGCTTCAACCCAGCTTATGGTCAGCCTAGTGGTTCCTTCAAGCCTGAACGTTCCCGTCCACCACTTCACTACAAGACGGATTCCTGTTCTCGTTCCCCTGAGAGACTTCGGCACCATGATGATCACCGGCACAGGGGTCACAGTTATAGCGAATATGGAAGCAGACACAACCGAGAGTTTGGAGGAGAGAAGCGGGACAGGGGGTGTAGTTCAGAACGGAGGCGTTCAGACAGTCCTCGGCGGTGTAAATCCGACTATGACCGAGGACGTGTGTCATCGAGACACCGCAGCAGAGAACGCTATCGGCACAGAGATGATCCAGGTTCACCCTCTTCAGACAGACATCGTAAACACGCTCGCAATCGCTCAGGCAGCCGAGAGAGAAAGCGCCGCCGTGTGGAAGAGGATAAAGAGAGGAGAACTGATGGATCTTCAAGCAGTCGAGAAAGGTCTGTGAACTCCAGCAGGAGCAGAGAGGCTGAGGAGATAACCATCGACCGCCATGAGGAGGACAGAGGACAGGAGGAGCTACACAAACCTGCTTGGATCCGCTGCACACATGCTGAGAACTACTACTCTAATGATCCCATGGACCAAGTGggCGACTCTACTGTCGTCGGAACCAGTAAGTTGAGAGATCTGTACGAGCGTTTTGAGGAAGAACTTGGTAAGAGACAAGAGCGTGCCAAATCCATCAGGCCTAAATGGGAACCACCCAAGACCAAACTGGACCAGGATCAGGATGAGAGTTCCAGTGAATCTGAGTGTGAGTCTGATGGAGGTGGTAGCACCTGCTCCAGCAGCTCTGACTCTGAGGTGTTTGATGTCATCGCTGAGATCAAGAGGAAGAAAGCTCATCCTGACCGCCTTCATGACGAGCTGTGGTACAATGACCCTGGACAGATGAATGACGGACCATTATGCAAGTGCAGTGCCAAAGCCAGAAGAACTGGAATTCGACACAGTATTTACCCTGGTGAACAGCCAGTAAAACAGTGTCGTCCAATGAACAACAATGCTGGAAAACTGTTCCATTACAGAATAACTGTGTCCCCACCCACCAATTTCCTGACAGATAGGCCAACGGTTATTGAGTATGATGACCATGAGTACCTGTTTGAGGGCTTTTCTTGCTTTTCACACACTCCGCTTACTAGTATCCCTTTGTGTCGGGTTATTCGCTTCAACATTGATTACACCATCCACTTCATAGAAGAGATGGCACCTGAGAACTACTGTGTTAAAGGCCTGGAACTGTTTTCCTCATACCTATTTAAAGACATCTTGGAGTTGTATGATTGGAATCTCACAGATCCTGAAGAAAATTCTCCGTTAGGCTGTCAGAGGTTTCATTTCATGCCTCGGTTTGTTCGGTTCCTGCCAGATGGAGGAAAGGAGGTGCTGTCAATGCATCAGGTGCTGCTGTATCTCTTACACAGCAGCAAACCTCTGGTTCCCGAAGAGGAGATTGCAAATATGCTTCAGTGGGAGGAGCTGGAGTGGCAGAAATATGCTGAGGAGTGCAAGGGCATGATCGTCACTAACCCTGGCATGAAACCCAGCTCTGTGAGAATCGACCAGTTGGACCGTGAGCAGTTCAACTCCAGTGTCATTACTTTCCCCATAATTGTGCATTTTGGTATCCGACCTGCTCAGCTTAGCTACGCTGGAGACCCGCAGTATCAAAAGTTGTGGAAGAGTTATGTGAAGTTGCGACACCTGCTGGCCAACAGCCCAAAAGTTAAACAAATTGACAAACAGAAGTTGATGCAAAGAGAAGAAGCTCTCCAGAAGATCAGGCAGAAGAATACGATGAGAAGGGAGGTCACAGTGGAACTCAGCAGTCAGGGTTTCTGGAAGACTGGCATTCGTTCTGACGTCTGCCAGCACGCTATGATGCTTCCTGTTCTCACCCATCACATCCGCTATCACCAGTGCCTGATGCATTTGGATAAGCTGATTGGTTACATGTTTAAGGAACGATGCTTGCTGCAGTTGGCAATGACTCACCCCAGTCATCATCTTAATTTTGGGATGAATCCTGACCATGCTCGCAACTCTTTGTCCAACTGTGGGATACGCCAGCCAAAATATGGAGACCGGAAAGTGCATCATATGTACATGAGGAAAAAAGGAATTAACACCTTGATCAATATAATGTCACGACTGGGCCAGGATGACCCATCACCTTCCAGGATCAATCATAATGAGCGCTTGGAGTTTCTTGGAGATGCAGTTGTTGAGTTTCTGACTAGTGTGCACCTCTACCACCTATTTCCAAGCCTAGAGGAAGGAGGACTTGCCACATATCGCACAGCAATCGTTCAGAACCAGCATCTTGCCATGCTTGCCAAGAAACTGGAGCTGGATCGTTTCATGCTATATGCCCACGGCCCTGATCTGTGCAGAGAGTCAGATCTCCGGCATGCCATGGCAAACTGTTTTGAAGCCCTGATAGGGGCTGTTTACCTAGAAGGGGGTTTAGAAGAAGCCAAGGATCTCTTTGGAAGACTGCTGTTTAACACTGAGGACATGAGAGAAGTTTGGCTCAACTACCCACCTCATCCTTTACAGGTGCAGGAGCCCCTGACTGACAGGCAGTTGATTGAATCCTCTCCGGTTCTGCAGAAACTCACTAATTTTGAGGATGCTATCGGAGTGCTGTTTACTCATGTACGTCTCCTAGCGAGGGCCTTCACTCTGCGGACAGTGGGCTTCAACCACCTCACACTAGGCCACAACCAGAGGATGGAGTTTCTTGGAGACTCTATCATGCAGCTTGTGGCAACCGAATATCTCTTCATCCACTTCCCAGACCATCACGAAGGACATTTGACACTCCTGCGCAGCTCATTGGTAAATAACCGGACTCAAGCGAAGGTTGCAGAAGAGTTGGGTATGCAGGAATTTGCCATTACCAATGACAAAACCAAACGACCAGTTGCCCTACGGACAAAGACTTTAGCAGATTTGTTGGAGTCATTTATCGCAGCACTTTACATAGATAAAGACCTGGAATTTGTGCACACATTCATGAACGTTTGCTTCTTCCCACGACTCAAGGAGTTCATCTTGAACCAGGATTGGAACGATCCAAAATCACAGCTGCAGCAGTGCTGTCTAACCCTGCGGACGGAAGGCAAAGAGCCAGATATTCCTTTATACAAAACACTTCAAACTGTTGGACCCTCACATGCCAGGACCTACACGGTGGCAGTGTATTTTAAAGGTGAAAGGATTGGCTGTGGAAAAGGACCAAGCATTCAGCAAGCTGAGATGGGGGCAGCCATGGATGCTCTGGAGAAATATAACTTTCCTCAGATGGCTCATCAGAAACGCTTCATCGAAAGAAAGTACCGTCAAGAACTGAAGGAGATGagaagagagcgagagagacagGAGAGAGATAGTGATGAAGGATAGAACAGCAGAAAGTGGAGAAGGAAAAGCATTTCTTAGGTAGAGTTGCAGGGAGTAAGTCAGACAACAGCAGGCAGAGGAAAGCAagtatgttttaattttgttgttttgttgttctgTGTATAAATCTGTGTTTGTTTAATCAATTCATATTAATAaggttttaaaagattaaaatttaCATTAACTAACCATCA

Function

GO:

id name namespace
GO:0016075 rRNA catabolic process biological_process
GO:0030422 production of siRNA involved in RNA interference biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:0006396 RNA processing biological_process
GO:0001525 angiogenesis biological_process
GO:0031053 primary miRNA processing biological_process
GO:0031054 pre-miRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0004525 ribonuclease III activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003725 double-stranded RNA binding molecular_function

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko05205 Proteoglycans in cancer
ko03019 Messenger RNA biogenesis
ko03009 Ribosome biogenesis
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-070209-23 Predicted to enable double-stranded RNA binding activity and ribonuclease III activity. Acts upstream of or within with a positive effect on primary miRNA processing. Acts upstream of or within angiogenesis. Predicted to be active in nucleus. Orthologous to human DROSHA (drosha ribonuclease III).

Ensembl:

ensembl_id ENSDART00000089017

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009084 lncRNA upstream 249226 13094316 ~ 13095670 (+) True XLOC_004570
TCONS_00010724 lncRNA upstream 929061 12415256 ~ 12415835 (+) True XLOC_004568
TCONS_00009075 lncRNA upstream 1981835 11359201 ~ 11363061 (+) True XLOC_004564
TCONS_00009063 lncRNA upstream 2896065 10448242 ~ 10448831 (+) True XLOC_004558
TCONS_00009058 lncRNA upstream 3177419 10163641 ~ 10167477 (+) True XLOC_004554
TCONS_00009105 lncRNA downstream 265926 13655710 ~ 13721912 (+) True XLOC_004580
TCONS_00009107 lncRNA downstream 350432 13740216 ~ 13742676 (+) True XLOC_004582
TCONS_00010898 lncRNA downstream 697631 14087415 ~ 14130458 (+) False XLOC_004585
TCONS_00010899 lncRNA downstream 1351368 14741152 ~ 14744702 (+) False XLOC_004589
TCONS_00010725 lncRNA downstream 1352445 14742229 ~ 14744674 (+) False XLOC_004589
TCONS_00009095 mRNA upstream 12916 13319132 ~ 13331980 (+) True XLOC_004576
TCONS_00009092 mRNA upstream 38013 13282797 ~ 13306883 (+) False XLOC_004575
TCONS_00009093 mRNA upstream 52129 13282807 ~ 13292767 (+) False XLOC_004575
TCONS_00009089 mRNA upstream 81238 13244149 ~ 13263658 (+) False XLOC_004574
TCONS_00009090 mRNA upstream 83151 13244184 ~ 13261745 (+) False XLOC_004574
TCONS_00009099 mRNA downstream 15000 13404784 ~ 13468339 (+) False XLOC_004578
TCONS_00009100 mRNA downstream 15661 13405445 ~ 13476088 (+) True XLOC_004578
TCONS_00009102 mRNA downstream 262577 13652361 ~ 13721825 (+) False XLOC_004580
TCONS_00009103 mRNA downstream 262664 13652448 ~ 13721912 (+) False XLOC_004580
TCONS_00009104 mRNA downstream 262963 13652747 ~ 13721911 (+) False XLOC_004580
TCONS_00009094 other upstream 52129 13283774 ~ 13292767 (+) True XLOC_004575
TCONS_00009079 other upstream 731445 12613335 ~ 12613451 (+) True XLOC_004569
TCONS_00009076 other upstream 1701225 11643551 ~ 11643671 (+) True XLOC_004565
TCONS_00009060 other upstream 3133848 10210932 ~ 10211048 (+) True XLOC_004556
TCONS_00009055 other upstream 3199085 10134366 ~ 10145811 (+) False XLOC_004553
TCONS_00009101 other downstream 67453 13457237 ~ 13457356 (+) True XLOC_004579
TCONS_00009106 other downstream 268238 13658022 ~ 13658144 (+) True XLOC_004581
TCONS_00009115 other downstream 712320 14102104 ~ 14103806 (+) True XLOC_004585
TCONS_00009129 other downstream 1991910 15381694 ~ 15381814 (+) True XLOC_004597
TCONS_00009153 other downstream 3570909 16960693 ~ 16960781 (+) True XLOC_004618

Expression Profile

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