RNA id: AMCG00000027


Basic Information

Item Value
RNA id AMCG00000027
length 402
RNA type mRNA
GC content 0.44
exon number 2
gene id AMCG00000027
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 106015 ~ 106682 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAGCATTGGCAGTGGTGCTGTGCTCTCAGTTCCCTTCACTACGGAGGAAAGATGGTCCCATGATGGCCATCACGTTTGAACAGTCTGCTACCCAGTTTGGAAGATCAAAACTAAAAGTGGAAATCAGATGCCAGCATGATGAAAGCAGCTACTATTACATGTACTGGTACTCCCAGCCAAAAACCAAAGGAGCTTTGGTACTTATTGGATATATTTATAACCTTGAGGCTCCAAATTACGAACCCAATTTCCAGCCTCGATTCAAGATGACGAGAGAAGCCCTCCAGAAGGGTAATCTGACCATCTCTGATTTAAAACCAGAAGACAGTGGCATATATTACTGTGCAGCCAGTATGCACAGTGCTGCACAAGGCCTTTTATCTATGTTCAAAATGTGA

Function

GO:

id name namespace
GO:0051674 localization of cell biological_process
GO:0050900 leukocyte migration biological_process
GO:0016477 cell migration biological_process
GO:0002376 immune system process biological_process
GO:0048870 cell motility biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0060326 cell chemotaxis biological_process

KEGG:

id description
ko04660 T cell receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185241 lncRNA downstream 124654 231336 ~ 247005 (+) False AMCG00000032
TU185251 lncRNA downstream 124654 231336 ~ 247005 (+) False AMCG00000032
TU185246 lncRNA downstream 125404 232086 ~ 247005 (+) False AMCG00000032
TU185248 lncRNA downstream 125404 232086 ~ 247005 (+) False AMCG00000032
TU185252 lncRNA downstream 125404 232086 ~ 247005 (+) False AMCG00000032
AMCG00000025 mRNA upstream 1653 55439 ~ 104362 (+) True AMCG00000025
AMCG00000026 mRNA upstream 68240 28694 ~ 37775 (+) True AMCG00000026
AMCG00000029 mRNA upstream 77351 27600 ~ 28664 (+) True AMCG00000029
AMCG00000031 mRNA downstream 7875 114557 ~ 114778 (+) True AMCG00000031
AMCG00000030 mRNA downstream 34339 141021 ~ 146934 (+) True AMCG00000030
AMCG00000028 mRNA downstream 40263 146945 ~ 155807 (+) True AMCG00000028
AMCG00000032 mRNA downstream 127197 233879 ~ 246914 (+) False AMCG00000032
AMCG00000035 mRNA downstream 149775 256457 ~ 316480 (+) True AMCG00000035
TU185255 other upstream 40726 64746 ~ 65289 (+) False AMCG00000025
TU185221 other upstream 69441 35282 ~ 36574 (+) False AMCG00000026
TU185240 other downstream 133820 240502 ~ 247005 (+) True AMCG00000032
TU185369 other downstream 342970 449652 ~ 498511 (+) True G147311
TU185496 other downstream 956403 1063085 ~ 1116950 (+) True G147416
TU185878 other downstream 2297048 2403730 ~ 2403972 (+) True G147726
TU186234 other downstream 3586427 3693109 ~ 3695802 (+) False AMCG00000094

Expression Profile