RNA id: AMCG00000028


Basic Information

Item Value
RNA id AMCG00000028
length 594
RNA type mRNA
GC content 0.37
exon number 2
gene id AMCG00000028
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 146945 ~ 155807 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGATGACACTCACTTCTATATATGTTGGTATCGACAGGACAAAAAAAGAACTTCCCATAATAGGATATTCTTCTGGTAAAGACAGTGTAGTGATGGAACCAGACTTTAAAGAACCACATTTTACCATAGCCAGACCAGAAATAAGGAATTCCtctttaacaattaaaaatctgGATTTTTGGAGACACAGCAGTGTATTTCTGTGCATCTCTTTCACAGCTGCAACAAATaggaataaattaaatgagCTGCCAGCAGTTCATTACAAGGACCGTTTTTCTGATGCAGTCACTGTGTCTCAGATGCCTGCAAATGTATTCTCAAATCATGGGGCTACATCTGAACTACTTGACTGTCAACATAATGATGATACCCATCTTAGAATCTACtggtacaaacaaaaaaacaaaggagaatTGGTTTTGATAGGGTACTCTCTTGGTGCAGAGAactctgaaaaagaaaaagactttAAAGGAGATAGATTTACAATAAACAGACCTGAAACCAGAAAGTCTTCTTTAGAAATCAAGACGCTGGACTTTGGAGACACAGCAGTATATTTCTGTGCATCAAGTGTTGCACAGTGA

Function

GO: NA

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04658 Th1 and Th2 cell differentiation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185241 lncRNA downstream 75529 231336 ~ 247005 (+) False AMCG00000032
TU185251 lncRNA downstream 75529 231336 ~ 247005 (+) False AMCG00000032
TU185246 lncRNA downstream 76279 232086 ~ 247005 (+) False AMCG00000032
TU185248 lncRNA downstream 76279 232086 ~ 247005 (+) False AMCG00000032
TU185252 lncRNA downstream 76279 232086 ~ 247005 (+) False AMCG00000032
AMCG00000030 mRNA upstream 11 141021 ~ 146934 (+) True AMCG00000030
AMCG00000031 mRNA upstream 32167 114557 ~ 114778 (+) True AMCG00000031
AMCG00000027 mRNA upstream 40263 106015 ~ 106682 (+) True AMCG00000027
AMCG00000025 mRNA upstream 42583 55439 ~ 104362 (+) True AMCG00000025
AMCG00000026 mRNA upstream 109170 28694 ~ 37775 (+) True AMCG00000026
AMCG00000032 mRNA downstream 78072 233879 ~ 246914 (+) False AMCG00000032
AMCG00000035 mRNA downstream 100650 256457 ~ 316480 (+) True AMCG00000035
AMCG00000034 mRNA downstream 161757 317564 ~ 336417 (+) True AMCG00000034
AMCG00000038 mRNA downstream 236371 392178 ~ 418905 (+) True AMCG00000038
AMCG00000039 mRNA downstream 272747 428554 ~ 428826 (+) True AMCG00000039
TU185255 other upstream 81656 64746 ~ 65289 (+) False AMCG00000025
TU185221 other upstream 110371 35282 ~ 36574 (+) False AMCG00000026
TU185240 other downstream 84695 240502 ~ 247005 (+) True AMCG00000032
TU185369 other downstream 293845 449652 ~ 498511 (+) True G147311
TU185496 other downstream 907278 1063085 ~ 1116950 (+) True G147416
TU185878 other downstream 2247923 2403730 ~ 2403972 (+) True G147726
TU186234 other downstream 3537302 3693109 ~ 3695802 (+) False AMCG00000094

Expression Profile