RNA id: TU185253


Basic Information

Item Value
RNA id TU185253
length 1565
lncRNA type sense_over
GC content 0.38
exon number 7
gene id AMCG00000032
representative False

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 231336 ~ 254441 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTCTCTAGAGGGGCTTGTCTCAGCAATAGCACAGCAGAgctctttctttttatatttaggTTATATGTCATTTCCTTCCAGGAGGATGAGATTACCCCCTAGCCTGCCTTGGCTGTGTTGTTGTAGGGTTGTATAAATAGAAATCAAACTgctttgctctctctcctgccaACAGAGGAAGTCACCTCATAGGAGCTGTGAAGTTTTTGTGTGACACTCTATGAAGCCTATTTTGGCGCGGGCACAAAACTAACAGTCCTTGaaAAGGAAGTTACGGAGCCCACTGTCCATGTCCTTGATCCCTCTGTAGAAGAAatcaaagagaaaaagagagccACCTTGGTGTGTGTAGCCACTAATTTCTATCCAGACCATGTTAGTGTCAGCTGGACGATTGATGGACGAGAGGCAAAACGGTTTAAGACAGACGATTTTGCAACCAAGGATAATGATAGCATGTACAGTATCACCAGCAGGCTGAGAGTCTCCACCAAACAGTGGTTCAACCCACAGACAAAATTCACTTGTTTAGTATATTTCTTCAATGGGACCGCTAATGTCACCAAAACAGCATTCACTATTGGAAAAGcttgTGGAGTTACCAAAGatGTATATCGCAATGCCACCCAGGGTGCCAAGCTGACATATGTAAtgttcctttttaaaagtagcctGTATGGGCTGTTTGCAGCTATTCTAGTGTTGAAACTAAAGGGCTATTCTGCAAAGCGATATGACTGAAGAATATTAAACTGAATcaatgataaagaaaaacaatatgacTGGTGGAGAATTTCCTTTGCTTGACactgcagcttttcttttttttttacttgggaAAACTGTACGATTGTTTTGCCCCAGAACATAAATAATTCCTCTTTTTTCTCAGGGTGATTGTAAACCTTTCAAAGTGTAAAATCAAACAAGATACACTGTGGGTCAGTGGTTACCAACCAATGGTTTGGCAAAGCTTCAATCTGGTCTAAAGACTGGGAACATGTGTTGATCAATTAAGCATGCCACTTAAACAACTCTGGACCTTATGGGCAGTGGGGTATTCAGGCGTAGGTCCACATGATCTTTTTATGACTGAACTTAACAaaacacctgcttaattgattataattaaatgtttcctaGTATTTATCAATTGATGATCTAATGGTTTCCTAATCTCTGctataaagttattttatttttttaatcttaattcaAATGTTGCTATTCCTTTTTTCCGATTTCAATTTTGCACTGaagcaaaaagctttgaaagttgTCCAGTTAATGATGTACTATGGGATGACTAAATCtaatttaaccttttattttttaaaattcagcAATTCTTGTTATTCTGTTAGATGCATTACATGTGTACAATCCTTCCCTCAATTAATGCTTAAAAGTTGAGAATAATCATAACCTTTCTATTTTTACAATGTGGCATTGTGAAAATAAGTCTACCATTACTTATTCGTTGGTGAAGActtggtgttgtgttgtgttgtgtggtcTGTTCTTGACTGTTGAATAAAAAACTTTTTCTcagcaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185312 lncRNA downstream 24272 278713 ~ 284041 (+) True G147265
TU185340 lncRNA downstream 83025 337466 ~ 339514 (+) True G147286
TU185342 lncRNA downstream 102331 356772 ~ 356988 (+) True G147288
TU185346 lncRNA downstream 131849 386290 ~ 386953 (+) True G147292
TU185372 lncRNA downstream 216254 470695 ~ 473507 (+) True G147313
AMCG00000028 mRNA upstream 76279 146945 ~ 155807 (+) True AMCG00000028
AMCG00000030 mRNA upstream 85152 141021 ~ 146934 (+) True AMCG00000030
AMCG00000031 mRNA upstream 117308 114557 ~ 114778 (+) True AMCG00000031
AMCG00000027 mRNA upstream 125404 106015 ~ 106682 (+) True AMCG00000027
AMCG00000025 mRNA upstream 127724 55439 ~ 104362 (+) True AMCG00000025
AMCG00000035 mRNA downstream 2016 256457 ~ 316480 (+) True AMCG00000035
AMCG00000034 mRNA downstream 63123 317564 ~ 336417 (+) True AMCG00000034
AMCG00000038 mRNA downstream 137737 392178 ~ 418905 (+) True AMCG00000038
AMCG00000039 mRNA downstream 174113 428554 ~ 428826 (+) True AMCG00000039
AMCG00000040 mRNA downstream 247054 501495 ~ 569704 (+) True AMCG00000040
TU185255 other upstream 166797 64746 ~ 65289 (+) False AMCG00000025
TU185221 other upstream 195512 35282 ~ 36574 (+) False AMCG00000026
TU185369 other downstream 195211 449652 ~ 498511 (+) True G147311
TU185496 other downstream 808644 1063085 ~ 1116950 (+) True G147416
TU185878 other downstream 2149289 2403730 ~ 2403972 (+) True G147726
TU186234 other downstream 3438668 3693109 ~ 3695802 (+) False AMCG00000094
TU186257 other downstream 3466544 3720985 ~ 3724316 (+) True AMCG00000093

Expression Profile