RNA id: AMCG00000036


Basic Information

Item Value
RNA id AMCG00000036
length 3753
RNA type mRNA
GC content 0.59
exon number 11
gene id AMCG00000036
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 343411 ~ 364668 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATGATGAAGATGGCACCTGTTTGCTCGACGTTTTGTGTGATCCCCAAGCCCTGAATGACTTCCTACATGGAACCAATGAGTTGGAGAGTGGGGACCTGCTCATTAACCCCTCTGCTGGTGACACCTCTCTCTTCACAGACACAACAAGTCCGGTCTCCCTGCTGGCAGATGACCCCCCATCCCAGGATGCGCCCCCCCCTGGCTGTGTGGACTTGTCCTTCCTGGAAGAGGCGCTGCTGGGGGCCCCTCAAGGCAGTGGGGGTCTTGGGGATGGGGAAGGGGAGCAGGAGGGAGGGACAGCAGGGGAGGGTGAAGAAGAGGAGGCCTGTGATATCCTGCGGCAGAGCCTGCAAGAGGCTGACATCACCGAGCAGACCCTGGCTCAGGAGGCAGGGCTGGCTCAGCCTGGCGAGTCCCTGTCACTGTACCCACCAGGCACCCTGCTTCCCGCTCCCACCCACTTCCTCCCAAAGCCACTGACTACCCAACCCCTGGTGCCCAAAGACACTCAGGGAGCCGTGGAGCCGCCGCAGCCCTCCCTCTTAGCGGTGGGGCCTGGTTGCCCTTCTCTTAAACCCACTGCCCCTCAGCTCATGGGGCTGCTTCCAGGCACTGTCTTCCCAGCCCCTACATCCGAACCCTCCTTTTCTCTCAATCCAGCGCAGAGCTCTGGCGTGCTGATCCAGAAGGCGCTCCCGAGTCTGAACGGCCGCCCCCTCTTCACCGCCCCTGCTATCAGAGCTAGCCCTTCCCCCAGCATCCTGTTACCCAGGGGGCCACTACCCATTCAACCTAAGTTGCCTGTCAGCATCCAACCCCGACTGGTCCAGATCAGCCCAAAGCCCCCTGGCCAGAAGACTCCGCCAGGCCTGACTTTTGTTTCTggcaccccctcccccaacatcTTGCTCTCCACTCCAAGTGCCAAGCAGCCGCCCCAGCCCTCCCAAGGTCTGACCAAACCACTCAGCCTGCAGCTTCTTAACCAGACTGGCAGCATAGTTATACAGCCACAGGGCATCTTCCCAGCACCCAACCAGTTTATCCTGCCCGGACAACCTCCAGTATCTGGGCCCCAGCCTCACAACACAGCCCGGCCCATCATAACCACAGCTGGCCCTGCAGGTCAAGCAGTGAGGCGCAGTCCCTCCAGTCAGCTTGTCGACGGCACCCAGATACTTACCGCACCTCCAGGGCAACTGAATTTCAGCCCTGTGTTCACAACCCCCACTGGCCAACTGGCGGTCAGACAAGGAGCTATACTCTCGGGTCATCTGCAGCTACAGTCTGCTGCCCCGGCTATTTTTCAGATGCCGGCCCACTTAGCTGGAACCTTTGCACCACAGGCCCCGGGGCAGCGTGGCACCCTGCTCCACAGCACCACCTTGGGGAACCACATTACCTTGCTCAACAGCCAGGGGGTATTGGGTCCCACAGTGAATGTCCAGCAAGGCGCCCCTCCAGACCTTGCCTCCGTGTCCATTGTTAATGGCCCTCCCGTGGTCCAGGGGCTGCCGTTCGCTCCTCAGGGCCAATGCTCAGCCCTGGCGGGAGCTGAAGGGCCTCCCAACCTGcagccccctgccctgctgctcCCAGAGAGACCCAGGGAGGTGGAGGGAAATACATCAATGGATGGAGTACCTTCTGAGGAACAACTGATTCATCTGCCTCAGCCAGCCAAGCCAATCCAGAGTCAGCCCCAGCCAGAGCTGCAGCTAATCCCTCATGCAGTGCTGCAACCCCAGGTGGTGACCTCCCTTCAGCCCCACCTTCCTGTCCAGCTACAAAATCAACAAGGACTGCAGAAAAAAAGTCTTGCACCAGAGTCCGAAAGTCACTGCCTGGAAGAGGGGCGCAGTGTTACCCCCCTTAAACAGCTCTTTGTCCATCATCTGCAACAGGTTCTACAATTGCCATCCCCTCCTGCCACAAGTCACACAACAACAACTCCACCAGCTGCCCAAGTGGTCACCATCTCTACTCCTTTGGTTAATCAGCGAGAGGCTACTACACCCACTGTACCATTGATAGGGCAGGCAGtggctctctcctctccagtaACCAATCCGAATCACATGACCACACCCACTAACCCTGGGAGTGCGCAGATGGGGACTCTTTGCTCACCTCTGATTGGACAGACCTCACAGAGCACTCCCCCTGTTAACTTCTTGTCACCAACCAGTGGGCAAACGGTCACGTTGGCAGTGTCGGGGACTGGCCAGGGACAGGTTGTCTCGCCCTTGTCTCCAGTACCCAGACCAGGCAAGGCAGCAACACTTGGGAGGGCCTTAACACCAGGTGGGACTGTGCCCTCACCCCAGAGCCCCTCTGTGCTGCCGCCAGGACCTCTACCAGTGCCAGGGCAGCCCTCAGCAGGGCCTCGGACCCAGACAGACCCAGCAGCCCATCACAGGACACTTGGCAAGCCTGCCACTGTCCTGGCTGTGGATGGAAAGGTGCTGACTCTTGGACTCCATCCTGCTTCCCCGAAAGTCCAAGGTCCCCCATTCCAGGGGCCCCTCATTCAAACACTGCTCACAGGCTCACAGCTGCATGGGCTAGATATGATAAATAGATACGATTTGCTGAGGAAAATACGCTCACTCCTATGGAGAAAACTGTTACTACAGTGTAATGagctgtgtgtttatgtttgtttgcttcgCCTTAGGTTCCAGCAGCAGCTGTGTTCTGATCATGGCTCAGTGGTGAACCCTGACATCAACTCTCCCTTCAGCTCCCTGGAGGACACTCTGGGGCGCCTGTTGCCTTACCACACCTGTGTTAGGGCACTGCCCTCCAGTGATGACTTCCACAGAGTTGATGAGCAGTTTGAAGCTGTGTCCAGTCTGCTGTTGAAACGCACTCAGGACATGCTCAACAAGTACCGCCAGTTGCTGCTTCAAGAGGCACGGGTGAGCCCGTCGGCAGAGATGGTGATGTTGGAACGGCTCTTTCTGCAGGATGAGAGGTCAACActgggagaggagaagagaatgGCCAGACTGGACCCAGaGTCCTTCATTGCCTCCTTGTATAAACCAGTGTCAGAGGGGACACCTGGGTCTCCTGCTACTCAGTCTCCCCCTCTTAAAGTGGGCAGCTCCTCGCCACCCTGGGCTATGCTGTCCAACCGCCCCCCTGGCCTAAAGACCTACCGCTCCAGCAGCCGTGGGGGACTCAAACTCACAATCAAGCATGAGGCAGGCTCCAGGAAGGTGGTGCATAACTCTGCCTGCGAATCCAGGGGTAAGTCTGTTGCTGTCATTCATACTGGACAGAACCGGGAGTGCAGGGAGATGACTAATGGTAACTCGGGCCGGGGACTGGATTTTAGGGAAACTCCACAGAGCCCTACACCTCCGCCCCTTCCCCTGCCCCTCCCGCCCCCGACAGTGGAAGGCCCCAAAGGAGAAGCCCAGAAGTGTGGGCCGGATGACAAGCAGACAGCCCCAGAACTGGCTTCAACAAAAGACCTCCCTACCCCCGACAACCACCTATGCCCCCCTCAGGCCAAGAGATCTCGGCCCGGCCCTGAGGAGGAGCCTGGAACCCCCCCGGAGGATAGCGCCCTTAGCGAACATCTCCAGAGCGCCATCGACAGCATCCTGGAGCTGCAGAGACTACAAGGTCCCCTGGCCCCGGACACTCACTCATTGGCATCCCTACAGGACAAACAAGAGAGGCAGGGGGCGTTGGCACTGGAGGAAGCTGTCAATAGCATCCTGGATGAACAAATGTAG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185290 lncRNA downstream 118078 195473 ~ 225333 (-) True G147248
TU185214 lncRNA downstream 323021 19601 ~ 20390 (-) True G147201
TU185362 lncRNA upstream 63755 428423 ~ 432307 (-) True G147305
TU185423 lncRNA upstream 295690 660358 ~ 680183 (-) True G147358
TU185440 lncRNA upstream 374938 739606 ~ 740609 (-) True G147368
TU185502 lncRNA upstream 438143 802811 ~ 887879 (-) False G147420
TU185503 lncRNA upstream 463787 828455 ~ 887879 (-) True G147420
AMCG00000033 mRNA downstream 86441 255301 ~ 256970 (-) True AMCG00000033
AMCG00000037 mRNA upstream 23682 388350 ~ 391817 (-) False AMCG00000037
AMCG00000043 mRNA upstream 208707 573375 ~ 593613 (-) True AMCG00000043
AMCG00000042 mRNA upstream 338989 703657 ~ 709451 (-) True AMCG00000042
AMCG00000045 mRNA upstream 475109 839777 ~ 840646 (-) True AMCG00000045
AMCG00000046 mRNA upstream 476038 840706 ~ 859715 (-) True AMCG00000046
TU185350 other upstream 22450 387118 ~ 392135 (-) False AMCG00000037
TU185352 other upstream 22450 387118 ~ 392482 (-) True AMCG00000037
TU185384 other upstream 120052 484720 ~ 485583 (-) True G147324
TU186746 other upstream 4974141 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 5696654 6061322 ~ 6067184 (-) False AMCG00000177

Expression Profile