RNA id: TU185352


Basic Information

Item Value
RNA id TU185352
length 2179
RNA type TUCP
GC content 0.40
exon number 5
gene id AMCG00000037
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 387118 ~ 392482 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATAAATGCAGTGCAATCTCTGTATACTCTCCTCCGTTTGCACTACTTCATTACAGCAACTAGCTAACTTACAAGTGTCTCACTCCACGATCAAATTCTTACCTCAAGGCCTTGTAGGAGTGCCTCTACACTGGTATATTACAGACTTTTTGGGGAAGTTTTAACTTAGAATGTGGCTGTGCTATATTTCGCCTTAGCTAAAATAAttctcatttgttttcacaCTCACAATAATCAGGGAAGTGACAAGGGTAGCAGCCAGATCCGGCACTTCCGCTCCCACCCAGACCGGAAATACGTTTTTAATTCTAATACGATAGCATAAGCATTAATGGATGCTCAACCCCACATGACGATGCATCCCACAATGCAACGCGACTGAGTTGTTCTTCCGCTGGTGAAAGGTCTTAACTTCCGCTTGTGCTCTTTGGTAGcaaggagagagaaacaccGAGAAATACAACCTTACAATCGACATTTCTCCGGAATTGAGAAAATTATGTCTCACACAATTTTGCTGGTTCAGCCTACCAAGAGGCCAGAAGGTAGGACGTATGCTGATTATGAGTCTGTCAACGAGTGTTTGGAAGgtGTGTGCAAAATGTACGAAGAGCATCTGAAGAGGATGAATCCCAACAGCCCGTCCATCACGTATGATATCAGCCAGCTGTTTGATTTCATTGATGAACTAGCTGATCTTAGTTGTCTTGTGTTCCGCGCAGACACTCAGACATACCAGCCCAACAACAAGGACTGGATCAAGGAGAAGATCTATGTCCTGCTGCGTCGCCAGGCCCAACAGGCAGCCAAATAGTGTAGGAAGGCCTTAGGGGAGCCTTAtttgggaggggggagggacAGGTGAAGGGGAAGAAGTGACCACTTTTGTATTATACTAGTTGAATTTTTGGCTAATTTAGtgaacttattttattttttaagggagANNNNNNNNNNccacacacacacacactttttacacctcccaaacaaaataagaaaaataatttggtttTCAGCTATTCTGCTAGAAGGTTTTTTGCCATCTGTGATTGTGATTATGGTCTTTCACCTGATGGTGCTTAGTGGAAGAAAAGGTTAATTGTCTTGATATGGTTACTCCCCATAATGCAACACACAAAAGCAGTTGTCCCCTTTCTTACTTTGACAGTTCTTTGACAGAGATTATCAGTGGATGAAAAGGGGTTCTTCCTTAGTCCATGCTGTTTAATGTATCTCCTGATCAACTAATGACATCAGTTTCTCATGTACAGGtctgaatacaaaacaatttgTAATCTGAGAAGctactgtgctgtttttttattttagtttttaagcgGTTTCTTAAATGTTACTGTGCTGGCATGGTAACTTAAGCCTATTTTTACCATCCCCTTGCTGAAATACTATCAGTGCTTGTGCATTTCAGATAGCCCCCCTTTCAACCATGGAAGCTGtcaagtaattttttttgtttgttttccccctcccctcttctTTCTTAAATTTGACTATCGGCTGCCCCTTGGTCTCAGAGCAGCAAGCACTGAGTATGCTTGGCTGTCATTTCCTGGATTAAGACTGGAGTCAGGGGATCTCAAGAAATGGCCTGGCACAGTGCAGACTTTTAAGAAATTGTGCTTATAGTACATACAATGTATTGATGTCATTACACACCTCCTGTGTGCTGTACCTAGACTACCTTTTCTTATTAGAAGTAAAAGTTAATACAGGGGTGTTCTGTTTAAGTCTAAGATAGCCAACAGTCTGTCACCTATAAAACTTGTCAATGGCACTTTGAACTCAGAACTGTTCAATTAAGTGGTTAAAAGCTCAGACTGAATGAAAATCTGTAGTCTGGACCTCTAGAGTTGGTACACCCATGTTAAAGCCTTCTAAAATGAACTGAAAGGGCAATACAACTTTCTCTGaagttgtttttggttttctatatttttttgcaacaaTTCTACATTCAGCAATATGCCATTGGATGAAACATGGTCTCATTGCAAGTTGTAGTGTCTGATCTTTTTTGAGGTTACTCTTTTCTTAATTCTGACCCTAAATGTTTTACCTTCTCCTTTATTTCTTTGTAAGTAGGCCTTGTGCAGTGCCCTCTGCAATGATGCATAATGTTCCTTTTTGGAGTgtttgtcaaaaaataaaaaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185290 lncRNA downstream 161785 195473 ~ 225333 (-) True G147248
TU185214 lncRNA downstream 366728 19601 ~ 20390 (-) True G147201
TU185362 lncRNA upstream 35941 428423 ~ 432307 (-) True G147305
TU185423 lncRNA upstream 267876 660358 ~ 680183 (-) True G147358
TU185440 lncRNA upstream 347124 739606 ~ 740609 (-) True G147368
TU185502 lncRNA upstream 410329 802811 ~ 887879 (-) False G147420
TU185503 lncRNA upstream 435973 828455 ~ 887879 (-) True G147420
AMCG00000036 mRNA downstream 22450 343411 ~ 364668 (-) True AMCG00000036
AMCG00000033 mRNA downstream 130148 255301 ~ 256970 (-) True AMCG00000033
AMCG00000043 mRNA upstream 180893 573375 ~ 593613 (-) True AMCG00000043
AMCG00000042 mRNA upstream 311175 703657 ~ 709451 (-) True AMCG00000042
AMCG00000045 mRNA upstream 447295 839777 ~ 840646 (-) True AMCG00000045
AMCG00000046 mRNA upstream 448224 840706 ~ 859715 (-) True AMCG00000046
AMCG00000050 mRNA upstream 497630 890112 ~ 940816 (-) False AMCG00000050
TU185384 other upstream 92238 484720 ~ 485583 (-) True G147324
TU186746 other upstream 4946327 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 5668840 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 5758238 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 5816792 6209274 ~ 6209957 (-) False AMCG00000189

Expression Profile