RNA id: AMCG00000042


Basic Information

Item Value
RNA id AMCG00000042
length 1888
RNA type mRNA
GC content 0.46
exon number 9
gene id AMCG00000042
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 703657 ~ 709451 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaacctATGAGACATCCCTTGGTCTGTAGGTTTTGTAAGAAATCACAGGCCACCCTTTCAGTACACCTCAGACGAGTGTGTATGAAGAGAAGCACTCCTGACGAGGTAACAGCTGAGGTGGAGGCGGCCAAGGAATCAATGCTGAAGTTCATGTGGGAAGCCAGAGTGATGGACTTCAATATTTGGAGAGTGTTGATCGACGACGAAAGTGTTTTGgcaaaggtaaaaaaatatatgctcAGCAAAGGATTCATATTCGTCAATGACGCTGCTAATAATCCACAGCCCACTACATTGTCTGTGCGCTCCTCCATAGAGGATGATGTGGAGGAATCAGCTGAGACGCAGGATACCCTTCATGATGCGAGGGAGCATTACAACTGGGAGAACAAGATTCGGAAGAAGATGCAGCAAGCAGGGCTCTACAGGAAATTCAGCTTGGATCACACAATGCTGTCTGGCTTCATGAAGTACCTGAGGGACGACCTAAAGATTCCAAATTTCAAACAGGAGgtAGAGAATGTCTCTCGTTTCCTCTACTTCGTGGATCCGACAGGTCCTAGCCTCAGATTTGTTACTGACATTGAGAAAACCAGGTCCTACTACAAACACCTTGCTGATGTTGGTGGACTTAGCAAGCAGACTGTCATCAATTACATGAAGAATGTAAGGAGGTTCATGCACTACATTATCGTGTACACAAACCTGCAATTTGATGACAAAGACAAACACGATAACTGCAAGAACTACAGAGATTTCCTTACAGATCTGCAGAAGGCATATAATAAACAGGTATCAAAGGAAATCACTGGAAAAAGGTACATGCAGTTGAACACCACAATGCAGTCACCAAAGGATTGCCTCCTCATTCTTCGAGCAGCAAAAAAGGACTTCCATGCAGTGATTGGCAAACTACTGAGTGGCGAAGTAGACATCACTGCAAATGAAAAACGTACTGTTCTGTATTACTTGGAGGCGATCGTCATGATCAAGCACCTGCAACGGGCTGGAGTGGTGAAGAACATGACTGTCAGTGAGTGGATCAACAGGACAGAATCCAGCATCGACATGGGATCGGAGAGGAAGAGATTTGTTATTGTGGGGGTTAAGGAGCACAAAACTGGATCACAGCAAGTGGCCACCTTTGCACTCAATGAAGAGGAAGAACTGTTAGCAAGGAGGGTCTTCGAGACTGCAACAAAAATTGGATTCAGCGATGGGGAGAAATCAATCGTTGCTGACTACCTGGCCCACACCACAGCCACAGCAGAGAACCACTACAGAATGATTCGACCGGAGACCGTAGCCACCGCAAGTTGTCTTCTTTCAGGACTTGTCTCGAACTCAGATTCAGACTCATCACCACTGGCAGCAACTCCAACACAACAGAGACCAGTTGCAGCAGCCTACACATTCCCAAGAATGGATGAGGACCAGGTTTATGCTCAACTTATCTTGAACTATCCCGTCACCATTGACGCCACAGCCCCCAAAGGAAAAGGAAGGAAGTCACTGACGGGCATGTATGACACAGTCTGCTATGACAGGTGGAGATCACAGCAGCAAGCCCTACGGGTTACCCATATTCTGTCACATTTTGCCAGACGTCAGCCGACTCTACACCATGTGGAGAAGTGGATTAAGAGACAAAGGTGGGACACCAACATCCCAAAGGCAGACAAAGTCTTCTCCATGTGGACACTGCAGAAGACCACAAAGGACACCTTTGGACGGCATATCAATCATTCAAGAGTAAATAGCAACTTGCAGCCTCACACATTCCAGTTGGAAATATCAGGGGACTTGACTGATGTGATTATCTTCATAGCAAAACATGAAATTCACATAAACACTGAACTTCTGTTTGACTATGGAGTCGAGAAAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185423 lncRNA downstream 23474 660358 ~ 680183 (-) True G147358
TU185362 lncRNA downstream 271350 428423 ~ 432307 (-) True G147305
TU185290 lncRNA downstream 478324 195473 ~ 225333 (-) True G147248
TU185214 lncRNA downstream 683267 19601 ~ 20390 (-) True G147201
TU185440 lncRNA upstream 30155 739606 ~ 740609 (-) True G147368
TU185502 lncRNA upstream 93360 802811 ~ 887879 (-) False G147420
TU185503 lncRNA upstream 119004 828455 ~ 887879 (-) True G147420
TU185516 lncRNA upstream 223272 932723 ~ 940835 (-) True AMCG00000050
TU185499 lncRNA upstream 462865 1172316 ~ 1174302 (-) True G147419
AMCG00000043 mRNA downstream 110044 573375 ~ 593613 (-) True AMCG00000043
AMCG00000037 mRNA downstream 311840 388350 ~ 391817 (-) False AMCG00000037
AMCG00000036 mRNA downstream 338989 343411 ~ 364668 (-) True AMCG00000036
AMCG00000033 mRNA downstream 446687 255301 ~ 256970 (-) True AMCG00000033
AMCG00000045 mRNA upstream 130326 839777 ~ 840646 (-) True AMCG00000045
AMCG00000046 mRNA upstream 131255 840706 ~ 859715 (-) True AMCG00000046
AMCG00000050 mRNA upstream 180661 890112 ~ 940816 (-) False AMCG00000050
AMCG00000065 mRNA upstream 594488 1303939 ~ 1342353 (-) True AMCG00000065
AMCG00000062 mRNA upstream 683358 1392809 ~ 1441915 (-) True AMCG00000062
TU185384 other downstream 218074 484720 ~ 485583 (-) True G147324
TU185352 other downstream 311175 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 311522 387118 ~ 392135 (-) False AMCG00000037
TU186746 other upstream 4629358 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 5351871 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 5441269 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 5499823 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 5506305 6215756 ~ 6216441 (-) False AMCG00000190

Expression Profile