RNA id: AMCG00000045


Basic Information

Item Value
RNA id AMCG00000045
length 870
RNA type mRNA
GC content 0.58
exon number 1
gene id AMCG00000045
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 839777 ~ 840646 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGGTCAGCCCCTGTTCTGTTGACGGTGTCGGTCCTTGCCACGTGGAGGCTTCCTGCTCTTCTATCCGGTGCCGTAACTGTGACGAGCTTGGACATGAGGCCAAGACCTGCACTGCAGAGCGGCAATGTGACCTGTGTGGGTCTACGGCACATCTGGTTCGCAGGTGTCCTCTGGCTGGCGTTTCCTATTCCCGGGCTGTCAGTGATGGGGTTTTCTCTGCTGCAGCTGCAGTCCAGGAGGAGGTGGAGAGTGGGGATTTCTGGCCCCTTGATATTGTTCTAGCGGAGGTGCGATGGGACCATGGGACCTCTCCACCCCCTGAGTTTGAGGAAGGGCCCCCTGCTGGTCAGACAGGGCTTGCTGCTGTTCCTGTGGCCCTTGGTTCTTTTGGGACTGGTTCTCTCCCACCAGGCCAGGGGGATCCTGATGGGGGCTCCCAGGTGGGGTATTTCGTCTCATCCCAGAGTTGGGACACCTTAATGCTGGAGGAGTTGGAGGATGTTTTCCAGGCTCCTAGGAAGGGTCTGAAGTGGGCTGGTCGGATGCGTGGGGCTGCAGGGGaccttaaaaaacatattacactGAGCAACTCGTTTGCAGGATTGACAGCAGAGGCGGAGGCTCCCTCTTCTTCAGGGTTCTCTGGTGCTACATCTGGCGCTGAGCTGGGTGTCTCACCTGCTGGTTCCAGGATGTCTCAGCAGGATGTGGCCCAGAAGGACTCCTCGGGCTCTGATTCTGGGGACACGGACATGGACACTGTGGACTCTGAGTCTTGTGGACTGTGTGTCCCGGGGGCTGGGGGCTCCAGTCCATTTTCTCTGGGCTCTCCCAGATGGTGTTTTTTGTGCTCGGGTCCCGAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185440 lncRNA downstream 99168 739606 ~ 740609 (-) True G147368
TU185423 lncRNA downstream 159594 660358 ~ 680183 (-) True G147358
TU185362 lncRNA downstream 407470 428423 ~ 432307 (-) True G147305
TU185290 lncRNA downstream 614444 195473 ~ 225333 (-) True G147248
TU185214 lncRNA downstream 819387 19601 ~ 20390 (-) True G147201
TU185516 lncRNA upstream 92077 932723 ~ 940835 (-) True AMCG00000050
TU185499 lncRNA upstream 331670 1172316 ~ 1174302 (-) True G147419
TU185500 lncRNA upstream 331670 1172316 ~ 1174302 (-) False G147419
TU185558 lncRNA upstream 348153 1188799 ~ 1189043 (-) True G147467
TU185695 lncRNA upstream 772687 1613333 ~ 1619067 (-) True G147588
AMCG00000042 mRNA downstream 130326 703657 ~ 709451 (-) True AMCG00000042
AMCG00000043 mRNA downstream 246164 573375 ~ 593613 (-) True AMCG00000043
AMCG00000037 mRNA downstream 447960 388350 ~ 391817 (-) False AMCG00000037
AMCG00000036 mRNA downstream 475109 343411 ~ 364668 (-) True AMCG00000036
AMCG00000033 mRNA downstream 582807 255301 ~ 256970 (-) True AMCG00000033
AMCG00000046 mRNA upstream 60 840706 ~ 859715 (-) True AMCG00000046
AMCG00000050 mRNA upstream 49466 890112 ~ 940816 (-) False AMCG00000050
AMCG00000065 mRNA upstream 463293 1303939 ~ 1342353 (-) True AMCG00000065
AMCG00000062 mRNA upstream 552163 1392809 ~ 1441915 (-) True AMCG00000062
AMCG00000058 mRNA upstream 643874 1484520 ~ 1488089 (-) True AMCG00000058
TU185384 other downstream 354194 484720 ~ 485583 (-) True G147324
TU185352 other downstream 447295 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 447642 387118 ~ 392135 (-) False AMCG00000037
TU186746 other upstream 4498163 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 5220676 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 5310074 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 5368628 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 5375110 6215756 ~ 6216441 (-) False AMCG00000190

Expression Profile