RNA id: AMCG00000046


Basic Information

Item Value
RNA id AMCG00000046
length 741
RNA type mRNA
GC content 0.55
exon number 5
gene id AMCG00000046
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 840706 ~ 859715 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGTGGAGTGGCAGCGGCAGTGGAGATGACGTGCCTGCAGTCACTAGCACTGCAGGAAAGGTTTGTGAGGGCAGGTATCACAATGTTAGGACACCTGATGGCACCTGGACTCTCTTGCTGGCCCAGTGCGGAAGAAttggcaggcaggcagagaaAGTGCTGAGGGAGGTGAGGATCTGTCTGTTTCCAGGGCAAAAGCAAACCCTTAGAGATGATGCCACACAGGTAGGAGGACAGGGAAAAGATGCTGTTTTTCCAGAGCTGCTGGTGTCTCCCACAGGTGTGGTGGAGGAGCAGGGGGAGGATGAGTCAGCCCCCAGGGCTGGACTGAGGAATACGCTGCACTTCAACTGGgatcctgctcctgctccttcttctgcttctgctgctgctactgctgctgctgctgctgctgctgctggtgattTTCCCCTGAGGATGGATTTCAGAAATGGGCCGAATGTGGACGTCACCTTTTCCACTACTGCTTCCTTCCAGGCTGTGCTTGCTCAATGCAAGGCTCGGGCAGACTTGGCTCCCCTGTCCCTCTATCAGGTGGAGTCTCTCTGGCGGCAGAACTTCTGTGTGGTCACTGTCCATGTTTATAACCCTTATTGTGGCAATTTCTGGGGTGCTATGTTGGAGGTCATCTCTCAGGAGAGAGAGCTGCGTGATGCACTTGGGATTTGGATGGGGAAACGTCAATTCCAGGTCCTTCTCCGGCCAGAAAGGGTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185440 lncRNA downstream 100097 739606 ~ 740609 (-) True G147368
TU185423 lncRNA downstream 160523 660358 ~ 680183 (-) True G147358
TU185362 lncRNA downstream 408399 428423 ~ 432307 (-) True G147305
TU185290 lncRNA downstream 615373 195473 ~ 225333 (-) True G147248
TU185214 lncRNA downstream 820316 19601 ~ 20390 (-) True G147201
TU185516 lncRNA upstream 73008 932723 ~ 940835 (-) True AMCG00000050
TU185499 lncRNA upstream 312601 1172316 ~ 1174302 (-) True G147419
TU185500 lncRNA upstream 312601 1172316 ~ 1174302 (-) False G147419
TU185558 lncRNA upstream 329084 1188799 ~ 1189043 (-) True G147467
TU185695 lncRNA upstream 753618 1613333 ~ 1619067 (-) True G147588
AMCG00000045 mRNA downstream 60 839777 ~ 840646 (-) True AMCG00000045
AMCG00000042 mRNA downstream 131255 703657 ~ 709451 (-) True AMCG00000042
AMCG00000043 mRNA downstream 247093 573375 ~ 593613 (-) True AMCG00000043
AMCG00000037 mRNA downstream 448889 388350 ~ 391817 (-) False AMCG00000037
AMCG00000036 mRNA downstream 476038 343411 ~ 364668 (-) True AMCG00000036
AMCG00000050 mRNA upstream 30397 890112 ~ 940816 (-) False AMCG00000050
AMCG00000065 mRNA upstream 444224 1303939 ~ 1342353 (-) True AMCG00000065
AMCG00000062 mRNA upstream 533094 1392809 ~ 1441915 (-) True AMCG00000062
AMCG00000058 mRNA upstream 624805 1484520 ~ 1488089 (-) True AMCG00000058
AMCG00000059 mRNA upstream 629756 1489471 ~ 1544026 (-) True AMCG00000059
TU185384 other downstream 355123 484720 ~ 485583 (-) True G147324
TU185352 other downstream 448224 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 448571 387118 ~ 392135 (-) False AMCG00000037
TU186746 other upstream 4479094 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 5201607 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 5291005 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 5349559 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 5356041 6215756 ~ 6216441 (-) False AMCG00000190

Expression Profile