RNA id: AMCG00000060


Basic Information

Item Value
RNA id AMCG00000060
length 3356
RNA type mRNA
GC content 0.60
exon number 10
gene id AMCG00000060
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 1619082 ~ 1642652 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCCGCGGCCAGTGGCAGGGTTCCGTGGGACAGTTCGGTACGCCTCTATCAATGCACACAAGAACAAGGAAATGGGTCGACACGATGACCTCTGGTCCCTGTTCTACATGCTGGTGGAGTTCATTGTGGGCCAGTTGCCCTGGAGGAAGATCAAAGATAAGGAGCAAGTTGGGAAACTGAAGGAAACCTACGATCACCGGATCATGCTGAAACACCTTCCCCCAGAGTTCACCATCTTTCTGGATCACATCTGTAGCCTGGACTACTTCAAGAAACCCGACTACCAGCTGCTGATGTCCGTGTTTGAGAACAGCATGAGAACATTTGGTGTGTTGGAGAATGACCCCTACGACTGGGAGAGGAGCGGCATCGATGGCACTCTGACCATCAACACAAACTGCACCACGCCCCAGCACCACACCCGCCTGACCCCAGCAAACTTCATTATGGCCAATGCTTCCCTGGTGCCAGGAGACCTGATGAGGGAGAACACTGATGAGGTGCTACAGGACGAGCAGCTGAGCGATGGCGAGAACAACTGTCCGGAGAGGGTTGTCCCTGGCTCGCCAGGCCTGCTGCCCCAACAGCAGGCTATCGATGTCTGGGAGGTTAACCACTACCGCAACCAGGTCGCATTGCCCGCCTGGAAGGCAGCCACAGAGGAGGAGCACAGTCCGAACCAGGGGAACCAAAGTCCGTATGCTGGGCCCAGCCTGGGGTCACCTGCCAAGGTCCGCTCAGAGACGGCCCAGTCCGAGCTCCACTCTCCCCTGCTAAGGAAGATGCGGCCCTTCTATAGTTCTGACCTGGAGAGCATTGGGAAGCAGAACGGTACAGCCCTGGACAACGAGGGTGACCAGTCTGGGATGGCCGGCAGTGGCGGCGGAAGGCGCATTGAGCGTGTGTGGCACTACGATGAGGAATTCCTGCCGGGGGGATCCAAGCCAAGTTCCCCTGCATCACCAGAACAAGGCGAGGGGGCAGCCAGCAGTGGCTTCTTAGCCCTGAACCTCAGCTCCGGGCGGCAGGATGTGGACTCCCGTGAGTGGGTTGTGGTGGACCGAGAACAGGACCTTCAAGACTACCTGGAGGGCAGTGGGGGCCAGGGGGCCAAAGCCACTAGCAGCCCTTCAGAGGAAGAGCCAGAGGTCCTGCAACTGGTTGAGGAGATTCCCAGCACAGATCCACTTGGCTCCAGTCCCCCTAGGGATCAGAGGGAGGGTGCTGGGCCTGAGCAGGGGCTGAAGGTGGAGCATCTAGAGCTCAGCGTGGGGCATCTTGGGCAGCTGCCTCCAGTTACTCCAACCAGCCCAGCAGAAGCCCTTGCTGAGGGTGCCCTCACACAGCTCCCCACCTCTCCTCCTTCACTTCCCGAGCCCTGCCGGATCACCAGCCCCCTTCTCCGTTCCCCGAGCCCGCTAgctctcctctccactctctcgGACCCCCTGCACCAGCGAGCGCCCGGCCTGAGACGGAGCCAGTCAGCTGATCACCCCGCCGTCCTCACCCGCTCGCCTGGCCACCGGAAGCTGCCTGCCGTCCCTGGGGGGGCCAAGTACCCCTCAGTCATTCGCATCTCCCGAGCCCAGCTCCAGCAGCTGACTGCTCCCCGGCCCTCGGTGCTGTCCTCTCAGTCTGCCTCTGACAGCGCTCCACAGTGCCTCTTGCTGGAGAGACGGGAGGGAGACTGCCAGCCCATGGACATCACAGCAGACATGTACTCACCGCAGGAGCAGGCAGGAGAGCAAGGTATTTCTGGGTGTGATGGGCCTGAGGAAAGGGCTCTCTCCAAGGCTGCCACCCCCACGGACTCACTGGCAGAAAAGCTGGCCAACGGGGAGGCGGGGCAGAATCCACCCAGCCCTGTGCCGAGCCAGGTGTCCCCACGCCAATCGCCAAGCCTGCAGAAGAGCCCCGTGCTTGCCAATGGCAACCTTTCCCCCAGCGCTGAAAGCTTGGGCGGAAGTGGTGGCGGCACCTTCCCTGAACTCAAAGACCCAGAGGGCAATTCTGGATCCCCCGATCACTCCACAGAGCCACACGGCCGCCCCCTGGAAGACAAGGTTCAGATCCCACCTGGGAATGGTGAAACTGTGATGGCTTCCACCCCGCTCCCCAGGAAGAACCCAACACGAAGGCTGAGCCGCATCCCAGTGCTGGAGCCAGGGCTGTTGGACTTGCCCCCCCCCGGCTCGGCCAAGGAGAAGCTTCTGCAGAAGAAGGCGCACCACTCCGACCCCACCCACCCTGTCTCAGACAAGCGCCCTCCGACAGGACTGCGTGGGGAGGCTTCCTCGGCCTCCGACCGTTCCCAGGATGATGAGTCGTGCCTGGGCTCCCGCTCAGACCGGCAGGGTGAGGATCCCCTctcactctcctcctcctctggtcCGCTGTCCCGCAAAAGCAAGATCCCCCGACCCGTCCCGGCTCCTGTGTCCATCCCTGTCTCTGATCCACCGACTGGACAGTTCTTCCCACGCCCCCCACCGGGGAAGCCCCCCAGCCGACCAGCTGTGGATGGCAGGTTGCGACGATACCGGATCCGTGCAAGCAGCAGCAGCGACTCGGACCTGTTCTCCTGCTTGGCCCACATTATGCAGAGCGGGGGTGGCGGTAGCTGCGGCCCCAAAATGCGGGGCTCAGTCCAGGGCAAGGGAAGCCCGGGCTCACCACGCTGTGCCAGGATCCCGCCAGGCAGCCCCTCTGCCCCCCACCGCAGCGCCTCTGCCTCCCCCCGTAGCTCCTCTTCCCTGCAGCGCTCTGTCAGCTCCTCCCCTTCCCGCCACGAACACAGAAGTGGAGGGGGCCTAGGTCGCAGCCGGTCGCCTCCCAGCTTCTCCGGCTCTCCACCGCCCCGTCGCGCCTACCCCCAGGAGACCTGCTGCAGCCGACAGGCTCGCTCCGGCTCCTTCCACTCCCCCCGGGGCAAGGCCTGCAGCCGAGAGGGCAAGTGCTCCAGTAAACTCAGCAGATAGTGATGGGGACACACCAAGGCATCCCTGCACCCACAGAGTTTTGATTGCTAGCATTCTGCTCCAGCACACAGGAGCACTAGCACATTCCTCctgcagataaaaaaataaataaaaaatgcatttacagtcacgtaagaaaaaagacaaaaggacGATAAAAAGAAACCCAAAATGTTCTTATGTAGATCACCCCACATTTCTGctcttttccctttttatatatgtttgtgtgtgtgtgtatacagctctggaaaaaattgagaccacttaacatagatttttccagagctgtatgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatatacacacacacacacaagagctGTGTTTTTGGC

Function

GO: NA

KEGG:

id description
K08815 TTBK; tau tubulin kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185695 lncRNA downstream 15 1613333 ~ 1619067 (-) True G147588
TU185698 lncRNA downstream 15 1616046 ~ 1619067 (-) False G147588
TU185696 lncRNA downstream 3135 1613333 ~ 1615947 (-) False G147588
TU185558 lncRNA downstream 430039 1188799 ~ 1189043 (-) True G147467
TU185499 lncRNA downstream 444780 1172316 ~ 1174302 (-) True G147419
TU185777 lncRNA upstream 177709 1820361 ~ 1829348 (-) True G147639
TU185783 lncRNA upstream 208271 1850923 ~ 1851379 (-) True G147645
TU185827 lncRNA upstream 443706 2086358 ~ 2119964 (-) True G147681
TU185855 lncRNA upstream 658546 2301198 ~ 2364242 (-) True G147704
TU185874 lncRNA upstream 740362 2383014 ~ 2383214 (-) True G147722
AMCG00000064 mRNA downstream 7871 1585546 ~ 1611211 (-) True AMCG00000064
AMCG00000059 mRNA downstream 75056 1489471 ~ 1544026 (-) True AMCG00000059
AMCG00000058 mRNA downstream 130993 1484520 ~ 1488089 (-) True AMCG00000058
AMCG00000062 mRNA downstream 177167 1392809 ~ 1441915 (-) True AMCG00000062
AMCG00000065 mRNA downstream 276729 1303939 ~ 1342353 (-) True AMCG00000065
AMCG00000061 mRNA upstream 11673 1654325 ~ 1664847 (-) True AMCG00000061
AMCG00000063 mRNA upstream 80998 1723650 ~ 1736101 (-) True AMCG00000063
AMCG00000068 mRNA upstream 245598 1888250 ~ 1903755 (-) True AMCG00000068
AMCG00000069 mRNA upstream 710348 2353000 ~ 2354076 (-) True AMCG00000069
AMCG00000087 mRNA upstream 1165042 2807694 ~ 2819520 (-) True AMCG00000087
TU185384 other downstream 1133499 484720 ~ 485583 (-) True G147324
TU185352 other downstream 1226600 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 1226947 387118 ~ 392135 (-) False AMCG00000037
TU186746 other upstream 3696157 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 4418670 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 4508068 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 4566622 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 4573104 6215756 ~ 6216441 (-) False AMCG00000190

Expression Profile