RNA id: AMCG00000064


Basic Information

Item Value
RNA id AMCG00000064
length 4047
RNA type mRNA
GC content 0.59
exon number 28
gene id AMCG00000064
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 1585546 ~ 1611211 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGCTCTGAGGCTTCGCTGAAACAGAAAGCGGACTCTTCACAAGTCCCTCCCCGCACTGCTGTCCCCTGCGCGCCTCCGGCGCCAGTCCACACGCCCGCGCCGCGCCTGCGCCGTGTCCTCCGCGCCCGTGCCCGCCCGCGCGCGTTCAGAGCGATGGCGGCGCTGCTGGAGTCGGTGCTGCGCGGCGAGGAGCGGGCTGGCCGGGCCGTGCGCTGGATCCGCGGCGGGCAGGAGAATGGCAATGAAGTTTTAGCCAACAGCAGTATCCAGCGGAAAGACTTTGTGCCGTTCCTCCTGAACTTCCTCCGGGAGCAGGCTAGCCACATCCTTGCCAATGGCCCTTCCACACCAGCCAAGACGCCTACCTCCAAGGGCCTACGGACCCCTGGCTTCTCCAACGAACGCCGAGGTTGCCGGGGAGGTGTGAAAGGAGCCAGCCGGGTGCAGCTGTTTTCACCGGGTCACTCCAGAAGCCCGGTTGAGCTCTCGACGCCAGGGTCCCACTGTCTCAGTGGGGTGAGTGCCCTCAGCAGCCcctcctgcagctctgtgtgGAGCTCTGCCCCCCGCTCCTCTGCCCCAGAGAGGCGTTCCACCCAGCGTGCCAGTTTAGGGGACTTCCTGGTTTCCCCATCGGAGCAGCCGCTCTCGCAGCGCCGTGGCCGACGGAGGAGTGGGGGGACACCCGGTGGCGCAGCGGGGCGACAAGGGGGGCACAGCCTGAATGAGGAGCAGGGCCGCTGGGACAGTCCACTTAGCAGTGCCGGGAGGAGGAATGGCACCTGCAAGGCAGATGTTGCCATCTccccacctccacccccccagCTCAACCTCAACAACATGGATGACTTCCCCCCTGTAGGAGCCTCTCCCACCTCACCTGGGACAAAACCATCCCGCAGGATCAACCCTACGCCAGTGAGTGCTGAACGGCCACTTTCAAAGCCCAAGAACTGCTTCACCTCCACGCCTCTCAGCAAGCCACCCACACCCCCTGCTATCCCAGAATGCCCTGGGGCAGCCCCACAGGGTGGTACTCCAAGCAGTCTGCAGGAGGAGAGGGAGTTGCTGCGTAGAGAGAGATCCAAACTTGCCCAGCAGAGCTCCTCCCCTGTACTCCCAGCACTGGACCCATGCACTCCCACAAAACCTGGGAGCAGAATGAGCACCCGTGTACAGCCAGACTCCCTCAATGTTTGTGCTGACATAGCCAATGTGTCCTTCTCAACTGAACTCGACCTGCTGGCTCAGCTTTACTGCACCTGCATAGCTGAGAACCTGGTGCCCAGTGTGTTTCTGGAGCTGTTTTTCGTGCTACAGTTGCTGACGTCTCGAGGGCCTGCCTCTCTGGAGGACAAGGGGGAAGACACCCTGCCCCAATCCTCTGATGTACTGGATAGGCACTACCTTAGAAACCTGCACAACTGTGTCTACTTCGCAGTCCGGGTCTTGGAAAATCAGTTTGAGCTGGTGTCCCACCTGGACCGCTGTATTCTGCGCCTTTTGGCAGAGAACGAGAGGGTGGGCTCCTTCTCGCCCTTGCTCAGGGATCGATTGGTCAATGCCTATGAAAACAGCACAGCCAAGGTGTCACCAACATTACCACCCTCCATCCAATCTGTCTCCTTCCAGCCAGCCACTGACAACCGCTCCAACTTCTCCAATGACAAGGCCTTCCACACCTTCAAGAAGCAGAGGGATATATTCTATGAACTACTTCGTGAATGGGAGGATTGCCACAAGGAGCCAGGCTGGGATTTTGAGCGAGTGCTGGGCATCAGAATCCGGACAATGGTCAACCAGTTGACAGCAGCTGGAAACCACAGCCACTTTGCCAGGCTTTTCCAGAAGCAGCTTATCCAGATGTGTAAGGGTTCCCAGGCCCTAGGCTCTGGTGGTGAGGCTCCTGACACCGACCTGCTCGGAATTCTGGGCACCGACAATCTGAGCCGCTTGAAGAGACTACAGGAGCGCTTTATCCAGCCCCAGGGCATCATAGGACCCTGCCCTCCACCCTCCTTCCCAGGGCACCAAGAGTTCTTCAAGGAGTTTCTTCAAGCTGCAAGCAGCTGCCAGCTCAACCAGCATTTAACAGACAGTCTGTGTCAGCAGATCCTAGAGCTGGACTCCATTGCCATTCTGGGCCCTGGCAGTGCcaaggaggaaggagagggagaaggagatatGGAGCAGCAGGATGAGAAGCTTCGTTTCGCTTCAGTGCTGACCACTGCCCGCCTCTTGGCCAAGTTCCTGGGCTTCATCACTTTCCTGCCCTACCAGATGGCTGAGCCCCCAGCCAGAGAGATTCAGGAGGCGGCCGTAACAATTCGCAACATGAGCGCCCCTGTTCTGGACGTGTGTGCTGTTCTGAGGTGCTCGGTGGAGCAACGGCGTGCTGTCCTCACTGTGCCTTGGCTAGTGGAGTTCCTGTCCATGGTAGACTACACAGCCCCCTTCCTGTTGCATTACAGGAGCGTTTTCACAATGCTGATCCGGCTATACAGGCGGATGGTGCTGGGACGAGGCGCTGAGACAAGCTACCTGAATCAACTATTGATTGTGGCAGTGCTGGGCTGGCTTTTCCAGATTCCAGCTTTTCCGGAAGATTTGTTCTTTGGCAGTGATTTTGAGAAAGATGCAGAGACTGTGGAGAAATGTGCTTCCTCCCAGGGACTGGACTGTCTGCCCCTGGTGGACCAGCACTTGCTGTACACCTGTTGCCCTTACCTGAGTGAATTCCGGAAGCTACTGGCTGCGTTTGTAGCAGGAAGTACAGCGAAGAACGGGGGCCTGATACGCAAAATCACCCCCACCTCTGCGGAGTCTATCGGGCCCCCCACTCCGCTATCACAGCAGAAACTGCAGGCGGAGTTGGAACAGGCATTCTTCCACAACCAGCCCCCATCCCTGCGCCGCACAGTGGAGTTTGTGTCAGAGAGGGTGGGCTCCAACTGTGTCAAGCACATCAAGGCTACCTTGGTTTCAGAGCTGGTGCGGAGTGCGGAGGCGATGCTGAGAGAGGGGCTGACTGAGGACCAGGCCAATGTGCTCAAGCTGAGGGACTCCATCTGCACCCAGCTATGTGAGAGGGGCAGGCAGGCGCTGGACCATGGCAGGCAGTTTTGCAGTGTAAAAGGCCCAGAAGCTGTCAGGGTACTGCTCCCAGAAGAGACCTCGGCAGCAGTTCTGAGGACATCTGAAGATATCACGGTGCGGTTATCCACTGAGAAAGCCTGCACTTGGCTCTCTGCTAATATAGCAGCCCTGATTAAACGGGAGCTGAAAAACACCTTTGATCGGGTGATGAAGACCATGCCACATCCTTCCACAGTGCCTGGTGAGGGAGCCGTCGTCGTGAAGGAGCAGCCCCCCACCAAGGCCAAAGAGACGGAAGAAGGAGAAGCCAGGTGCCCCTTGGGCTGTCAGCACAGGGCCACACTGCCTTCAGATATCATCATTGAGATCAAGGAGGTGCTCAGTATAGCAGTGGGCCCCAGGTCAGAGGGGGAGCACCTGGGATCCCTACAGCTCTTGGATCTCCTTACCAGGCTGAGAGAGACGCTACACTGCCGGAAGttcaTATCTCCTGTTCCTGAGCAGATGCTGGCTCGCTGCACTGTCCTGCTAGCCAGTAAGCTGGTGTCAGGCGACTTTCCCCTGGGGTCCCCTGCTCTCCCCCAGGCAGAGTTGGCCCCTGGTGGCAACCCAGTCAGGGCACTGCTGGAGCTCCTGATCAGCTTGTGGAGACTGGACTTCTCCACCCCACCTCCTCTCAGGCTCCTGTTCACTGAACACAACCTGACTACAGTATTCAGGGCTGGAGACACACAGTGGGGCCACTTCCTTTTTCTCACTGGGGAGCTGTTGGAGAAAGGGCTGCTGGGGCAGGAGGAGGTGGCTGCGCACTGGAAAGGGCTGTCAGAGCTGCCGTGGCCAACAGAAGTGGACTCGCACTGTCCCGCACAGGCAGCTGGAGAAGCCGAGCCGCCGAGCCGGAGTGAAAGTGAAATGGGGCGACACCCTCTGTGCACCGTGAACTGA

Function

GO: NA

KEGG:

id description
K19531 CDAN1; codanin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185558 lncRNA downstream 396503 1188799 ~ 1189043 (-) True G147467
TU185499 lncRNA downstream 411244 1172316 ~ 1174302 (-) True G147419
TU185500 lncRNA downstream 411244 1172316 ~ 1174302 (-) False G147419
TU185516 lncRNA downstream 644711 932723 ~ 940835 (-) True AMCG00000050
TU185503 lncRNA downstream 697667 828455 ~ 887879 (-) True G147420
TU185695 lncRNA upstream 2122 1613333 ~ 1619067 (-) True G147588
TU185696 lncRNA upstream 2122 1613333 ~ 1615947 (-) False G147588
TU185698 lncRNA upstream 4835 1616046 ~ 1619067 (-) False G147588
TU185777 lncRNA upstream 209150 1820361 ~ 1829348 (-) True G147639
TU185783 lncRNA upstream 239712 1850923 ~ 1851379 (-) True G147645
AMCG00000059 mRNA downstream 41520 1489471 ~ 1544026 (-) True AMCG00000059
AMCG00000058 mRNA downstream 97457 1484520 ~ 1488089 (-) True AMCG00000058
AMCG00000062 mRNA downstream 143631 1392809 ~ 1441915 (-) True AMCG00000062
AMCG00000065 mRNA downstream 243193 1303939 ~ 1342353 (-) True AMCG00000065
AMCG00000050 mRNA downstream 644730 890112 ~ 940816 (-) False AMCG00000050
AMCG00000060 mRNA upstream 7871 1619082 ~ 1642652 (-) True AMCG00000060
AMCG00000061 mRNA upstream 43114 1654325 ~ 1664847 (-) True AMCG00000061
AMCG00000063 mRNA upstream 112439 1723650 ~ 1736101 (-) True AMCG00000063
AMCG00000068 mRNA upstream 277039 1888250 ~ 1903755 (-) True AMCG00000068
AMCG00000069 mRNA upstream 741789 2353000 ~ 2354076 (-) True AMCG00000069
TU185384 other downstream 1099963 484720 ~ 485583 (-) True G147324
TU185352 other downstream 1193064 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 1193411 387118 ~ 392135 (-) False AMCG00000037
TU186746 other upstream 3727598 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 4450111 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 4539509 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 4598063 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 4604545 6215756 ~ 6216441 (-) False AMCG00000190

Expression Profile