RNA id: AMCG00000066


Basic Information

Item Value
RNA id AMCG00000066
length 4776
RNA type mRNA
GC content 0.53
exon number 13
gene id AMCG00000066
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 1740809 ~ 1781771 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGTGTGCTGCGAGGGGGAAGTTGCAGAGCTGCTTCACAGTTGTGCAATCTCAACGCAATAACGCGTAACGCACAGACCAGTTaacctagttttttttttttttcttcaattttttaCTGCCATCTTTCCTTGCTGGCTTGCAAGGCTAACGCGgatattattcttttttttcacttgaagaaaaataacagcgTGAGGTCACCAAACCATGAGTCAACCTTGGCAATGCATGCAGTCATCTTTATTTGACTGCAAGCTGGGTGCGTGGAGTCCTGCCTTTTATTATAGTTAAGGGGGACATGAGGAAGGAGGAGTGCAAATGACGACCGCGGTGGGAACATTTCGTTTTCaagcgtgagagagagaaaaaaaaaagcacggACGTGGATACAAAGTTactaacatttttgttttgtgcctgAAGTCGAGCCGAAGGATCCCAGTCATGAATGGAGGGTGTGACTGACTCCCAGACGTCTCAATCCCTCAGTGCCCTTGGATCTCGGTGGCAGTCAGAGAGGGGGGGCTTTTAATTCCTTTCCCATCTGTACTTGATCCCCTCTTTTGATAACTCCTAAGACCCCCTGCAGTGGGCAGCCAGTCAGCTTTtattccagaaaaacaaaacaaaaccgacTCGGGATCTTGACTTGATTGAAGCTGCATCTCTTTTCATGTTCCAGCCATGAGCCTGCCACCCCAGCCGAAAGCTACAGCCAAAAGGACAGGAAAGCGCATCTCTTTCTTTAATGAGCAAGGTGGCCAAGTTCCACAGAAAGAGCCCCTGCAGCACATAGAAGGGCCCTATTACACCCTTGGCCCTCAGGTGCCAGATCCGTCCCGAAGCGAACTGGGGTCGGTTCCCAGCTCAGAGGGCCCAACTAGGTACCTTTCCTCTGTGATTTTCAGCCCTGAAAAGGGCGATCAGAATCGGGGCCACTACCAACAGACCGTCTCCATGAAGTGGCCACACCAGGAACAGGGGACTGCCAACTGGCCTCAGGGGGTCGCCATCGGGAACTGGGGCCAAAACTTCAGCCCCTTCCTTGGTGGTATTAACATGGACACTGGCCTCCAGAATTATGGCAATCATGTGTTCCCCAAACCTGGTCAGGAGACAATGCAGCAGCCCAAAAGGGGGCAGGAGAAGCAGCTGCCAAACCCGGCTGAGGTCTACCGAGACCCAGCCAAGGTGCGGAATATGGAGTgggagcagcagcaacaacaggctGCGGCTGCCCGACAGCAGGCCCATTTTCAGGCCTTCCAGCAGGGACAGAAGCAAGGAGCCTCTCTAACGCAGTCGGCGTCAGTCCTGCAGCCCTTCCAGCTGGCATTTGGGCAGCAGAAGCAGCACCTCTCATCTGGGTATTTTCCAGTCTTTCAGACCAACAGGACTATGCCAAATTTAAATTTCAGTGGACAGCCTAAAACGCAGCAACagctacaacaacaacagcagcagcagcagctacagcagcaacaacagcagcagcaacaacaacaacaacaacagcaacaacaacagcagcagcaacagcagcagcaacaacagcagttACAGCAACAGCAAttacagcaacagcagcagctacAGCAACAGAGTCATCATTACCTAGAAACGTACTTCCAGAATGCCCATCATCACCCCCACCATCATttgcaacagcagcaacaggcCCCCCAATCCCTGGCACCCCAGTCTCACCAGCAGGGGCCGACTGTCCAGTTTCAGCCAGGAGGCATGAACCTTGACCTTCAGAAGTACTCGGCAAGTCTCCGACAGGCAGAGGCCTCCTCCCAGCAGCCCCTACCTCGGAGATCACGACGTTTGTCTAAAGAGAGTATGCTTCCGGTGGGGGAACAGCCTGGCAACCTTAACCCTTGGAACCAGGTAACCCAGGGACCCCAGGGTCCCACTGGTGGTTCCGGAGGTCCCCAAAATGGAGCCCCTGATGTCCGAGTGGCTGCAGGGCAGGAAGATGTCCCAGCAGCCACCACCGGAGTAATCCAGAGCACTCGAAGGAAGAGGAGAGTCTCCCAGGAGGTCAACCTTGAGACGCTGGCCCAGAAGGCTTCTGAGATGGAGTCCTTACCTCAAAGAGTGGACATGgCTGATGAGAGAGGCAGAGCCGCCACTATTATGGCCAACACTGTCAAGGCTGATGGGGAGCCTGTTAACGCAAAACGGGCCCGAGATGAAAGTCTGGTGCCCTTGGTGATCCCAGTGTCGGTGCCAGTCAGGAGAGTTGACCGCATGTCCCCCAGCCGGGAGCAACTAGAGATGGGCTGGGCCCAGAGGACATGCCCAGGAGAGCTGGCCCAGCCTGAGCACAAGCCCTCGGTCATAGTCACCCGCCGGCGATCATTGAGGAACTCCCTTTCTGAGAGCAACAACCAGGATGGGGATGGGATCAAGGAGGATGACGGGAAGGCAGGGGCCAAGTCCAAGCGCCGCCCGCGCCCTGAGCCCCTCTTCATTCCCCCAAAAGCGGGAACTTTCATCGCTCCACCAGTTTACTCTAACATCACCCCTTACCAGAGCCACCTGCGCTCCCCAGTGCGCCTGGCCGATAACCCCCTGACCATGCCGCCCTACACCCCGCCACCCATCCTCAGCCCTGTGCGCGAGGGCTCCGGCCTCTACTTCTCcaccttcctctcctcctccaacAGCCTCTCCGGACCCCCACCCATCACCCCAAAGTCAGCCACTCGCAGCCTGCTTAGATCCAACAGCTCTGATATCACCCCTCCTGATCTCCCTCCTATAGGAGAAGCCACACCTGTCAGCATAGAACCAGACCGGGGGTCGACCCAGCGTGACCAACACAAGGCCGATCTGGTGTGGAAGCCCCTGGAGGAACTGCATTCAGCACCACCGCATCGGGAGACCGGTAAGGAACGCCTGCTGGTTTTCTACATCAAAGCAGTGGAGAACCTCATGAATTTGGCCTGTTCCAGTGTGCTGTGCGGAGGGGGAACTAATCAAGAGCTGGCCTTGCACTGCCTGTATGAAGCCAAGGGAGACATTCTGgGAGCCCTGGCACATTTGTTGCTGAAGAAGCCTATTTTCTCCAAGAACCACCCTCTGGGGGACTATCACTATTCAGGGTCAGACAAATGGACGTCCACAGAAAAGTGGTATTTCAACAAAGGAATCGCTGCATACAAGAAAGACTTCTTCATGGTGCAGAAATTGGTGAGGACGAAGACTGTGGCACAGTGTGTGGAGTTTTACTACACCTATAAGAAGCAGGTGAAGATCGGTCGCAATGGCACACTCCTGTATGGGGACACGGAGCCTCAGGAGGGCAGGGGCCTGCACGACGAGGTGGAGGTGAACGTGAAGAGCTCCCAGCGGTTTGAACCGGACAACCGGGATACCCCTCACGAACAGGAACAGAACGATAGGAAGTGGGAGGAGCCAGCTGACAGGAAGCGGGGCCCCAGTCCTCCAAAGGTGAAGCAGACAATGGAGGCCTGTGAGAATTCTAGTGAAATGCTGGTGTTGAGGAGTCAAGAGCTGCGACCcgaggagaagaagagagagatgcCCTCAAGAGTGAGGCAGCCGCCTcagccacccccaccccctcagcCACCTAAACCCCGCCAGGAACCACCCACAAGCGACAAGAAGAAGCCAGTCCCGCCCACTGTCAACAAAGGCCAAGAACAAGATAATATCTTCCCCTGTAAAAAATGTGGCAGGGTGTTCTACAAGGTGAAGAGCCGCAGCGCCCACATGAAGAGTCACGCCGAGCAAGAGAAAAAGGCAGCCGCACTCCGGCAGAAGGAGGCGGAGGAGAAGGCAGCGGAGGAGGCGGCGGCGGTGGCAGCTGCGGCTCGACAGAACGGTGCACAGGagcaggacagcagcagcgaGGTCTCCTCTGAAGAGGGAGAAGACGAGGATGATGTAGATTGGCACTGAGACTCCCAGGGAGGCGGGGGAATGAAGGCGTGGCTTCCATGCGGAGAATCTGCCTCTCTTACATAGCACACAGAAAAGAATACCTGCCTCCTGTTGCTTCTACTTTCAGTGCTGACTCTTCCagaagctttatttatttatctttctgtgGAACTTTCCCAACACAGGTGTTcaggggatttaaaaaaaaatatatatatataagcccTCCAGCCCTGCTCTTCTCCAAACTTACTGCTGGAAGATAAAGGTTTCAGGACAGCATTTTTGCTGTGCagtttaaaaaccaaacaaatcacaCATACAAACCCCTTCCCCCACCAGTGTTTTCCCATAGGGCTTGGTACAGTTGCACCCTTTTCCTGAGACTTTGAAGCCAGAGATAACAAGCCCTTCACTCCACTGAGCACTTTGACACGGTCTGCTCGTCAACACAGAATTAATGGTTTACTCCAACGAGATCTTCAGAGCTGGACCCTCCTTCTGAGGAGATGTGACAAACCCATTGGCGGAAAAATCACTAGACTACACAGTGTAACTCGTTGACTATCgagctgcttttttttccccccccccgtttaaatgcaaagcaacaacgacaacaaaaaaTTGAGTGAATGGGAAAAGCAATGTGGCCATTCTACAGGAAGACTGCCAAAAATAACTGttcaacaaataataaaaaaaagtatgtatttggTGTTCTGAAAAAGTGCcgtgcttttcttttaatttaatttcactgtcGATGCCTTGGATGTTTTTACTGCTTTTTATCTATATAAGACAATCAATTTTTGAATGCTCTTTTATATCCAagaatattgttgttgttgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185687 lncRNA upstream 120734 1619172 ~ 1620075 (+) True G147580
TU185686 lncRNA upstream 124858 1613310 ~ 1615951 (+) True G147579
TU185671 lncRNA upstream 152514 1588077 ~ 1588295 (+) True G147565
TU185670 lncRNA upstream 154485 1586057 ~ 1586324 (+) True G147564
TU185655 lncRNA upstream 248496 1489580 ~ 1492313 (+) True G147551
TU185772 lncRNA downstream 38586 1820357 ~ 1829543 (+) True G147635
TU185815 lncRNA downstream 276762 2058533 ~ 2058770 (+) False AMCG00000073
TU185836 lncRNA downstream 509369 2291140 ~ 2358137 (+) True G147688
TU185838 lncRNA downstream 519716 2301487 ~ 2368445 (+) True G147689
TU185834 lncRNA downstream 568270 2350041 ~ 2354058 (+) True G147687
AMCG00000057 mRNA upstream 21203 1693152 ~ 1719606 (+) True AMCG00000057
AMCG00000056 mRNA upstream 357755 1361377 ~ 1383054 (+) True AMCG00000056
AMCG00000055 mRNA upstream 446044 1243198 ~ 1294765 (+) True AMCG00000055
AMCG00000054 mRNA upstream 576405 1139043 ~ 1164404 (+) True AMCG00000054
AMCG00000053 mRNA upstream 698206 991040 ~ 1042603 (+) True AMCG00000053
AMCG00000067 mRNA downstream 78737 1860508 ~ 1860744 (+) True AMCG00000067
AMCG00000072 mRNA downstream 231776 2013547 ~ 2034642 (+) True AMCG00000072
AMCG00000073 mRNA downstream 254252 2036023 ~ 2058765 (+) True AMCG00000073
AMCG00000070 mRNA downstream 332890 2114661 ~ 2115167 (+) True AMCG00000070
AMCG00000071 mRNA downstream 346813 2128584 ~ 2135898 (+) True AMCG00000071
TU185496 other upstream 623859 1063085 ~ 1116950 (+) True G147416
TU185369 other upstream 1242298 449652 ~ 498511 (+) True G147311
TU185240 other upstream 1493804 240502 ~ 247005 (+) True AMCG00000032
TU185255 other upstream 1675520 64746 ~ 65289 (+) False AMCG00000025
TU185221 other upstream 1704235 35282 ~ 36574 (+) False AMCG00000026
TU185878 other downstream 621959 2403730 ~ 2403972 (+) True G147726
TU186234 other downstream 1911338 3693109 ~ 3695802 (+) False AMCG00000094
TU186257 other downstream 1939214 3720985 ~ 3724316 (+) True AMCG00000093
TU186262 other downstream 1978408 3760179 ~ 3760624 (+) True G148040
TU186772 other downstream 3653387 5435158 ~ 5435762 (+) False AMCG00000142

Expression Profile