RNA id: AMCG00000076


Basic Information

Item Value
RNA id AMCG00000076
length 7260
RNA type mRNA
GC content 0.49
exon number 21
gene id AMCG00000076
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3308930 ~ 3327640 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATGGCTACCGTCGAGTTGGCAGGCAGAGATCATCTATTCATGCCgacctaaaaaaacaaacacaataacagTAGGAATGAATTAGCCGGACGTGCTGCTCATcgcagtttaattatttaattttcacctGTATACTTTTTAACTGTCACCCGTTTGCGGTTTTGACCGGGGTAAGGTGACACTACTTGTATTTTGATGAGCCCCCTTCAGCGGAAAGCCGCGAGTTTTCCTGCGCTGTTTCACCGGCAATGCGAAGCGCCAGCACCGGGTAACACTACAGCAGCACCGCCTGCAGCCTGTGGTCGCCTTTACAATTAGAGCCGGCGGTCATTGAGCACCGAGGGGAAAACGGGCCGCACGTTTCTGTTAGACTGGATGCGGTAACGTTGTCTTGTATCTGTTTCTGAAACTGTACGATAGACTTGCTCCTTTGTTGATGCAATAATGTCATCGTGGCTTGGAGGGATCGGCTCCGGGCTCGGGCAGTCCTTGGGGCAGGTCGGGGGAAGCCTGTCCTCGTTTACCGGCCAGATTTCCAGCTTCACCAAAGATATTCTTCTGGAAGGGACGGAGGAAGTAGGAGATGCTGCCACTGAACTACACGTATCCCACTCAAGATTAACAGAGTTGGAAACAGCCTATACAACACAGAAATCGGAGTATGAACGGCTGAAAAAGCTCCACACAGAACTCGAGGAGAAGCATGAGGCAGCAGAGATCCAAATAAAACAGCAGTCGACCGAATACAGGAGTCTGCTGCAGCAAAAAGAGGTGGAAATCAGCCATCTGAAAGCCAGGCAAAATGGCCTTCAAGAAGAGGTGCAAAAGCTCCAGATGGCAGCACAGTCCTCCGGTGCGGCTGTCCTGCCCACCACCACTACGGCCACCTCCTTCCTCCCCTCTGCAGCCCCTCACAGCGGCTTCCAGGGCGACGAGATGGACTTCGGAGACATCATCTGGTCTCAGCAGGAGATCAACAGGCTGTCCAATGAAGTGTCTCGTCTCCAGTCAGAGGTTTCCCACTGGAGACATCTGTCgcagGGTTCTAAAGCTCAGGGGACTGCAAGTACTGATCAGAGTGATGTCCACAAGCTCCAAAGAACTATTAAGGAGCTGAGAGAAAGTATGAGCCGGGAGATCGATGAGCACCAGCACGAGCTGTCTGCCCTGCAAGATGCCCACCGGCAGAAGATGGGGGATATCACACGCCGGCACCGAGAGGAGCTGGCAGAGTATGAGGAGAGGAtcgaggagctggaggagcagctGCAGACCGGTGGTCCGAGGACAGGGTCCCAGGATAATTCCAGAGTGTCAGAGCTGCAGAGGACACTGAAAGCGATGGAGGAGACCTCAGAGCAGCAAGAGAAGAAGTTGAAGGGCCTGGCTGAGAGTTTGGCTGCGGCGGAGAAGAAATACACTGCCGTGTCACAAGAGAAGGAAATGGCCCAAGCAGAGAACAATCAGCTGATGCAAAACTATCAAAGACTGCAGAACTCGGTGGAAGAGCTCCAGACCAGGGTCAAAGACCAGGAGGAGAAAGCTATGCATAAATCGCATCTTGAGAATGAGATCAATGGGCTAAAGAAAGCGCTGGCAGCTGCGGAGAAGGAGATCTCAAGACTGAAAAGCCTCAGTGAGAGTGAGAGTGAATCCAAAACGGAAGTGGAACATGCAGACATTCTAGAACTCAACACGATAATTGAGTCATTGAGGAAGAAGCAGGATGAGTTGGAACAGCAGAAGGTGGAGCTCCTTGAGAAGGTGAAATCTCAAGAACAGGCAGTGGCGAGTGCTGGAAACAGTGAGGAACTGGATGCTGCCCTGCCGGAAGTGGAGGAACTGAGACAGAAACTGCAAGACAAAGAGATGGCATTTAGGGAATGTACCATGGAGAAAGACACACTGGCTGCGGAGGTGGAGGAACTGGATAAGCAGAACCAGGAGGCTAATCTGCACTTGGTTTCGCTGAAGGATCAGCTGTCTCTGCAACGCAAAGACGCAGATGCTGCCATCGCCTGTTTGCAGTCGGAAGTGGAGAGCTCAAAGAAGCAGCAGGGGGAGCAGGCTGCCATGCACAGGGACCtggagatgcagagagagaagcTGAGCCAGAGTGCCTTTGCCCTCAATGACATGCACATGAGCAAGCAGCAGCTGGAGGCCACTGTGAAGGAGCTCAAGGACAAGCTGGGGAAGCTCCAGGAGCGCAACTCGGAAGTTCGCAAGGAAAACACAGAACTGAAAAAGCGGCAGCAGGAAAGTGAGGAGCAGCTGGAGGCAGCCAGGTCAGAGCTTTCCAAGTCCAGGGAGGGTGCTTCTGATGGGGACCACTGGAAACATCTGGTGCAGCAGAAGGAAAAGGAGATTTGTGAACTGAAGCGAGAAATCTCAGACATCCAGGGCTTGCATGAGAAAGTGTTGTCCACAAATTTTGAACTCAAAATGGAAATCCAGAAGCTTAAAGCGGAATCAAAGGAGGCAGCCATGAAACAAGATGAAGATGCTCAGGCTGTTTTGAACAAGGTCACCTTAGAAAAAGACACGAAAATAGAAGCTTTAAGGCTGGAGAAGGGGCAGTTGGAAGCTGAGCTCAACCAAGCTGAAAGCAGGTTAACAGAACAGTCTAAGCAATATCAGCAGACTATTGAGGAGCTAACTCGGGCAAGGAGCATGGATGCCTCAGCTTTACAAACGGAGCACGAGCGTATGGTGACGTTGAATCAAGAGAAGGACTGTGAGATTTCTGACCTGAAGCGAGAGATTGCACAAATGGCAGCAGATCACCGGGAAACCAATGAGATGCTGGCCAGCAGTGTGTCTGGGCAGAAGCAGCTGACTGAGCTGATCAAGGAGAAGGATACCTTTATGGAAACGTTCAAGGAAAGAGCGAGCGAAACACAGAAGGACCTGGAAAGATGTGCCAAGGCAGCCAAAGAAGGGGAGATTTTAAAGCATGTGCTCGAAGAGAAAGACAAGCAGCTTGGTGTGATGAAGGAGGAAAACAGTCATCTCAAAGAGGAAATCGATCGCTTGAGGGACCAGCAGAGCAGACCTCAACCCATGGCGGAGCCTAAAACCTTGGATATAATTACAGAACTGGAAACTGAGATCACACACCTCAAGACCAAAAATAACAACTTGGCAGAAGAGGCTTCAGCTCTAAAGAAAACCATGGAAGAGCAAAAGAGAGGCCTGTTACAAACTCAGCAGTCATTTCAGGCACAACAAAATGAACTGGATCAGGCCAAAACCCACAATGAGCAAATTAGTCTGAATTATGAGAGGCTCATAGCTGAGAAGGATGGAGAGATTGTTCACCTTCAGGAATCCCTAGACCAGGTTAAGAAACAGCTTCAGGGGGAAAGGCCCATAATCCCCACCGATTCCCCGGTGATCCTGCAGGAAGAAAAGACTCAGTCATTGAATGGTGAGAATGGAAATGAGAAGCATGACTTGTCTAAAGGGGAAATTGAAAGACTGGTGAAGGGGATTAAGGAGAAGGAAATTGAGATCCACCTTCTTAATGAGAAGAATTTGTCCCTGACCAAGCAGTTGGATCAGCTTGTTGTGTCAAAAGATGAAGTGGGTAAACTCTCACTGATGGTCCAGCAGAAGGACCTGGAGATACAAGCACTCCACGCCAGGGTTTCCTCTGGATCTCACATGCAGGATATCCTGTATCTTCAGCAGCAACTCCAGGCCTACGCAGTGGAAAGGGAGCAAGTGCTGGCGGTTCTGAATGAGAAGACTAGGGAGAACAGCCAGCTGAAGTCCGAATACCACAGAATTATGGACATCGTAGCGGCCAAGGAAGCTGCTTTGATGAAGCTTCAAGAGGAAAATCAGAGGATGTCACACATGAATGACACCGGGAGCCAGGAAATGGTGCGTGAGACCATCCAAAACCTCTCAAGAATCATCAGGGAAAAAGACATTGAGATTGATGCCTTGACGCAGAAGTGCCAAACGCTGCTGACCGTTCTTCAAACATCAAACGCCGGACCGGGCACTGAGTCAAGTGGAGTGAGCAGCAACCAGTTTGAAGAGCTTCTTCAGGAGAGGGACACCCTTAAGCAGCAGGTGAAGAAGATGGAGGAATGGAAGCAGCAAGTCATCACAACAGTCAAGAACATGCAGCACGAATCTGCACAGCTGCACGAGGAACTCCTCAATCTTCACGGCCAAGTCTTGGCTGACAGTGACTGCAACTCCCAGTTGTCTGTGGACTACAATAGACTAATCCACAGTTACGAGCAGAAGGAGAAGAAGCTGGGCAGCCTGAGTCAGGAACTTGCTCAGGTGCAGCAATCCATCAGCCAGCTGAGCAGCACCAAGGACGTTCTTCTTGGAAAACTTGATCTGGTCGCTAACAGTCCTGAGTGTGCATCTCTGGTCATGAATGAAGCTCCCACCCAAGGTGCTTCTCCAGAAGACCAGGAAGGACAGGTGAAACGGTTGTACCAGGAGGTGGAATATTTGAGAGGAGTTGTAGGAGAGAAAGAGGCCTTCATAAGCACTCTTCAGGAAAATAACCACCGGCTGTCCAATTCTATGGCTGTGGCTTCTGAAAGTGGACAGAGGGGACAGGAAGAAGCAGCAGCTCAGGTCAGGCAGGCCAAGGAGAAGCTGGAGGCCCTTCAGAAGTCCCTCAGAGAGAAGGACCTGATGATTAAAGCTAAAGGGGACCAGCTAAACTCTGTGAGTGACAGCTTGAGAAACAAAGAGAATGACAATGATGTGCTGAAGCAGGCCGTGACCAACTTGAAGGAAAGGGCGCTTATGCTAGAGATGGACATTCGCAAACTAAAAGATGACAATGAGCAAATCATTGCAAAGtccagagagaaagaaacagagtTCAGGGCGTTGCAGGAGACTAACATGCAGTTCTCCATGTTGCTGAGAGAGAAGGAGTTTGAATCAAATTCCATGAGAGAAAAAGCGACTGCGCTGGAGAAAATGTTGAAGGATGGAGAACAGGGCAAGTCAGGGGAATTAAACCAGTTGCTCAATGAAGTGAAATCGATGCAAGAAAAAGCCGTGAAATTCCAGCAGGAGAGGGACCAGGTGATGCTCGCTCTCAAGCAGAAGCAGATGGAAACCAGTGCTTTGCAGAATGAGCTGCAGCATATGAGGGACAAGGAGCAGCGCTTGAATCAGGAGCTGGACAGGCTGCGCAGACACCTCATCGAGATCGAGGACTCCTACACCCGGGAGGCTGTGGCCGCCGAGGAGCGGGAGACGGAGCTCAGGAGGAAAACGGCGCTCTTGGAAGAAAAGCTAGCGTCCTCTTCCAGCGCTGTTGTGAGTGCCAGccACCAAGCCAGTTTGCAGGTGGAGTCGCTACAGGAGCAACTGAGTGCAGTCTCCCGGCAGAGAGATGAGCTGACTATGAAGCTGCACACCTCCCAGGAGCAAGTCAGCCAGTACGCAGTGTCTCTCTCCAACCTGCAGATGGTGCTCGAGCAGTTCCAACAAGGCAAGGCTTATTCTGCCAAGTCTGGCTTTTACGCCTTGCTCACCAGCTTTTTAGACTTCTCCCatgttttcatgcttttatacCTAACATTTCAGGATTGCATTGCTGGCACCATAAAAAAacataAGGAGAAAGCCATGTATTCAGCAGAGCTAGACAAACATagaaaggagaaggaggagtgGAAGCGGATGGCAGAGAAGCTGCAAGATAGAGCAGCATCCCTGCAGATAAATCTAGATGAAGCTAATGCAGCCCTGGAATCTGCTTCAAGACTCACCGATCAGCTAGACCTGAAAGAGGAGAAAATCGAGGAACTGCAAAAACAAGtggAGCTCCGACAGGAGATGCTGGAAGAGGCTCAGAATAAGCTTATGAACCTCCTGAACAGCACTGAAGGGAAAGTTGACAAGGTTTTGATGAGGAACCTGTTTGTGGGACACTTCCACACTCCCAAGAACAAGCGCCATGAAGCTCTGAGGCTGATGGGCAGCGTGCTGGGGATCCAGAAGGAAGAGATAGACGAGCTTTTGGCAGAAGATCATCATCGTGGAATGAGTGGGTGGGTATCCAGTTGGCTGGGGGGTCGCAATGCCCAAAGTGTCCCCAACACTCCGCAGAGACCTGGCCATTCGCCATCTTTGAACAGCtcTTTCTCCGAGATGTTTGTGAAGTTTTTGGAGGTGGAGTCCAGGCCGACACTGCCAGCCCCAAAGCTACCAATGTATGACATCAAGCCTCTGAGTGCCCCCCCGACAAGCCACAACTACAGCAGCGCAGTCGCTCCCACTACAGGTGGTTCTGGGATCGGCAAAAGACCAGAGTCTAACCCGTTTTTAGCTCCGCGGTCTGCTGCCGTGCCTCTGATGACCACGGCGGCCCCAGGGGCAGGAGGGGGCGGCCACCTCCTCATGAAGCCCATCTCTGATGCCCTGCCCACCTTCACCCCTGTGCCTGTGTCTGCAGAGGCCAGCGGGGCTGTCCTGAAAGACCTGCTCAAACAGTGATGGGCAGCCTGCCTCACTCAAGCACTTTATGAGACAATTGGACACTATTGTAaccaggattaaaaaaaaaaaaaaaaaaaaaaaacaggccttCTTATCTCAAGCTGAATCTCAAGTACTGTATTAAAAAGCGGCATTTCATCGACATCTTCCACAGTATCTAAAATCTCTTCAGCCTGTTGTCATGTTCGCCCAGACACCCTAAAGAATCAGGACTTCGCATCTCATATTTAAACATCAAAACAGTGTTCTGATTTGATACTTtgacttttttccccaaaacagTAGATAATAAAGCTTAGAATATACAGCGTGCACATACAGATTGGTACTATTGGTATTAATCTGTAGCTTTAACTGTCcctaatatacattttctgtaacaCCTTTACCAATAGCATACCGACTGGTAAGCCTTCACCACTTTATTTGGTCTGAAGTAAAGTTCTGATGCATTCGAAGTCCTTTGAAGGATCGCTTGTGTCCATAtgttatatattgcattatttgtaaATCTTACAAATCTTTACTTGGAGGcaattttttttacatagtttAATATTCAGTCCCATGCACTCTCAATCTTACAATTTTGGCACAAGGGACATTGCAGATTTATAAGGCACAGCATCTGTAAAAACTATACAGATACATAACTTTAAAATTGTCTTTTAGGTTTACAAGGCGCTGAGTTAATATGTGGGAAGCATGTGGTTAAAGCAATAATAGTGGTCTGAACCATGTAGAGTATTTAAAAGAACACtacagtg

Function

GO: NA

KEGG:

id description
K23368 TRIP11; thyroid receptor-interacting protein 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186125 lncRNA downstream 129 3307169 ~ 3308801 (-) True G147921
TU185988 lncRNA downstream 294347 3010249 ~ 3014583 (-) True G147823
TU185941 lncRNA downstream 515601 2790287 ~ 2793329 (-) True G147782
TU185877 lncRNA downstream 905312 2403398 ~ 2403618 (-) True G147725
TU185874 lncRNA downstream 925716 2383014 ~ 2383214 (-) True G147722
TU186147 lncRNA upstream 135663 3463303 ~ 3463632 (-) True G147941
TU186193 lncRNA upstream 224519 3552159 ~ 3557837 (-) True AMCG00000084
TU186213 lncRNA upstream 314725 3642365 ~ 3642669 (-) True G147997
TU186232 lncRNA upstream 360323 3687963 ~ 3688231 (-) True G148011
TU186263 lncRNA upstream 432662 3760302 ~ 3760617 (-) True G148041
AMCG00000077 mRNA downstream 3670 3291179 ~ 3305260 (-) True AMCG00000077
AMCG00000097 mRNA downstream 21123 3268369 ~ 3287807 (-) True AMCG00000097
AMCG00000101 mRNA downstream 53341 3238847 ~ 3255589 (-) True AMCG00000101
AMCG00000099 mRNA downstream 72053 3216712 ~ 3236877 (-) True AMCG00000099
AMCG00000096 mRNA downstream 101118 3198879 ~ 3207812 (-) True AMCG00000096
AMCG00000080 mRNA upstream 60550 3388190 ~ 3399653 (-) True AMCG00000080
AMCG00000084 mRNA upstream 227056 3554696 ~ 3558901 (-) False AMCG00000084
AMCG00000091 mRNA upstream 380743 3708383 ~ 3708970 (-) True AMCG00000091
AMCG00000092 mRNA upstream 398697 3726337 ~ 3735602 (-) True AMCG00000092
AMCG00000105 mRNA upstream 453343 3780983 ~ 3804361 (-) True AMCG00000105
TU185384 other downstream 2823347 484720 ~ 485583 (-) True G147324
TU185352 other downstream 2916448 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 2916795 387118 ~ 392135 (-) False AMCG00000037
TU186746 other upstream 2011169 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 2733682 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 2823080 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 2881634 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 2888116 6215756 ~ 6216441 (-) False AMCG00000190

Expression Profile