RNA id: AMCG00000077


Basic Information

Item Value
RNA id AMCG00000077
length 2590
RNA type mRNA
GC content 0.47
exon number 10
gene id AMCG00000077
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3291179 ~ 3305260 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAACCAGGTGCGCGTTGTGCGTCGGGGGGGACGTCAGAGCGGCGGTCCGCACAGCACTTTATCATATTAATAGAGTAGAGCAGGAGTAGACACGCTCCCACTAGAAGCACTTTGCGGCGTGTGTGTCTTTTCTAAGGGACGAAGATCTGCAGGAGCCACACACTAACACTGGTGTGCTTGAGTTAAGGAGTAACTTGAGATTTTTTACACCCACTGCAAGAATGCTTATATCCCTATTCTTTACCCTGTTGTACATCCACCAAGGAAGCTCACAGGCGTGTACAGATGGATTCTATCCAGACCGGCGGACTGGGCAGTGTTTAGATATTGACGAGTGTCGTGTCATTCCGGATGCCTGCCGGGGGGATCTGAGGTGTGTCAATCAGAATGGCGGCTACCTCTGCATTCACAGATCCCTGTTCTCCCCAAGTTACCCTCAAACGGGCTCCCAGTCCTTCCCTGGACTGTCGTACCCAGAATCCTCAGGGCCCTACAACCCCTACCCCGCTGTCCCAGCCCCGGCCCCCATCCCGGCCTCCATCCCGGCCTCTAACTACCCCACCGCAGGGAGATCTGCCCCCTGCCTGCTGGGTTACACCCGAGAGGAAGGCAATCAATGTGTTGATATAGATGAGTGTCGCTATGGATACTGCCAGCAGCTGTGTGCCAACGTGCCAGGGTCCTACTCCTGCTCCTGCAGCACTGGCTTCGTCCTCAACCCCGACGGCAGGACATGCCAAGATGTGGATGAATGCGATGGAGAGAGACCCTGTGGGCACAACTGCTTCAACACCTACGGCTCATACATGTGCAGCTGCGAACGGGGCTTTGAACTGGCGGCAGATGGCACCACGTGCAATGACATGGATGAGTGTGGTTTCTCTGAGCTGCTGTGTCAGCATTCCTGTGTGAATACCCCTGGCTCCTTTTTCTGCCTGTGTCCACCGGGGTACATGGTGTTCGAGGACGGCCGGAGCTGTGAAGaTATCAATGAATGTGACACTGGTAACCACACCTGTACAACAGCACAAGTATGTTTCAATTTCCAGGGAGGATATAAGTGCCTGGACCCAATTAAATGTGAAGAGCCTTACGTTGAGCTCAATGAAAACCAGTGCATGTGCTCAGCAGACAACCCTGCGTGCAGGGAGAAGCCCTTCACCGTTCTGTACAGACACATGGACCTGAGCGCGGGCCGCAGCGTGCCGGCCGATATCTTCCAAATGCAGGCCACCACGCGCTACCCAGGGGCTTTCTACATCTTCCAGATCAAGTCTGGCAACGAGGGCAGAGAGTTCTATATGAGGCAAACGAGCAACGTGAGCGCCACGCTGGTCCTGGCCCGCCCCATTAAGGGCCCCAAAGAGGTGGTCCTGGACTTGGAGATGGTCACAGTCAACAACGTCATCAACTTCCGAGGGAGTTCCATCATCCGGCTGACAATATTCGTCTCAGAGCACAGCTACTGAGCACCCCCACCCAACCCCGCCATGCCACGGGATTTCCCCTCAACTCAACTTCTCTGTCAAGACCCTTTTTTGCCCTCACTGACCATTTACCAAGAATCTTACTGAGGGACACAGAACAGGTCTCTTGCCTTTCCGCTCGGATCTTGATCTCAGATTCTCCCTAACCTTTCCTGGCACACCCTGCCCAGTGGCTGCCTTATAGCAAAGTGGAATATTTATGCAACAGACGTAAAAGTACCATTTGGTTTTGGAATGTACTACAAATTCTTATGCGCTGGAGGAACCGCAGACCGGCTTTTTGAAGACCTTTCCATCTTCAgccaaacacattattttgaggttttcagtttatttcttgTGATTGATGCTAccttgtttggttttgtttgtctttttcgtCATTCCCATTTTGTGGTTCACTCTGGTAATACCCCATTTAATTCTAGgggatatatatacattatttttttctgcattcttTTGAACTTGACATTGTCTCTGTATGAAACCTTCAGATGACAGATTTCTTCTAATGTTGAGTTTTTTCAGAgttcattttgaagaaaaaagatGTGTAGAAAACCCAAAGGAAATCAAATGGGCACAAAATGGAGTACATCAGTACAGACAGAATTGTAACTTCCATATACATCACTTATTTCACAGAGTGCTACTAGTATTAACCCATTCACTGTATGGAACGcactgtaatacaaaatatacctgtaatacaaatatatggtTACACACAAGTGCTGTGATTCCCCTAAACAGACAAATTAGTATACTCCCATACTGTGTGAAATTGTTACTCATTTTAAACTTGGCACCATGGTTCTTTGggatttacaaattcaaaagtaaatgttATCTGCAATGTTTGTGAAgggttttattaaagaaatctaataatgatgatattatatttgtttttccccattttATGATTTTGTGTCAAAGGTTGAGCAGATAAAGGCTTGCAAGCTTAATAGTGAATGGaagtctgttttccttttttaaaaagtttttttaatttgtatttttttttaatgttgaattgttttttataaagaTCGCTATCAAAGAATTCAatctgtttaataaaaaaatatattggacCA

Function

GO: NA

KEGG:

id description
K17340 FBLN5; fibulin 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185988 lncRNA downstream 276596 3010249 ~ 3014583 (-) True G147823
TU185941 lncRNA downstream 497850 2790287 ~ 2793329 (-) True G147782
TU185877 lncRNA downstream 887561 2403398 ~ 2403618 (-) True G147725
TU185874 lncRNA downstream 907965 2383014 ~ 2383214 (-) True G147722
TU185855 lncRNA downstream 926937 2301198 ~ 2364242 (-) True G147704
TU186125 lncRNA upstream 1909 3307169 ~ 3308801 (-) True G147921
TU186147 lncRNA upstream 158043 3463303 ~ 3463632 (-) True G147941
TU186193 lncRNA upstream 246899 3552159 ~ 3557837 (-) True AMCG00000084
TU186213 lncRNA upstream 337105 3642365 ~ 3642669 (-) True G147997
TU186232 lncRNA upstream 382703 3687963 ~ 3688231 (-) True G148011
AMCG00000097 mRNA downstream 3372 3268369 ~ 3287807 (-) True AMCG00000097
AMCG00000101 mRNA downstream 35590 3238847 ~ 3255589 (-) True AMCG00000101
AMCG00000099 mRNA downstream 54302 3216712 ~ 3236877 (-) True AMCG00000099
AMCG00000096 mRNA downstream 83367 3198879 ~ 3207812 (-) True AMCG00000096
AMCG00000098 mRNA downstream 114060 3136030 ~ 3177119 (-) True AMCG00000098
AMCG00000076 mRNA upstream 3670 3308930 ~ 3327640 (-) True AMCG00000076
AMCG00000080 mRNA upstream 82930 3388190 ~ 3399653 (-) True AMCG00000080
AMCG00000084 mRNA upstream 249436 3554696 ~ 3558901 (-) False AMCG00000084
AMCG00000091 mRNA upstream 403123 3708383 ~ 3708970 (-) True AMCG00000091
AMCG00000092 mRNA upstream 421077 3726337 ~ 3735602 (-) True AMCG00000092
TU185384 other downstream 2805596 484720 ~ 485583 (-) True G147324
TU185352 other downstream 2898697 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 2899044 387118 ~ 392135 (-) False AMCG00000037
TU186746 other upstream 2033549 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 2756062 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 2845460 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 2904014 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 2910496 6215756 ~ 6216441 (-) False AMCG00000190

Expression Profile