RNA id: AMCG00000079



Basic Information


Item Value
RNA id AMCG00000079
length 780
RNA type mRNA
GC content 0.58
exon number 4
gene id AMCG00000079
representative True

Chromosome Information


Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3443513 ~ 3464306 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCTATCAGATGGTTAGATCAGAATCTGTACAACGTCCTCCGCTTCCGGCCCCTGCCCCTCAAGTACATCAGGCCCATCCTGCAGCAGGTCACCACTGCCCTGAGGAAGCTGGAGACTCTGGGGATCATCCACACTGACCTCAAGCCTGACAACATTATGCTGGTGGACGTGGCCAGGCAGCCCCTCAGAGTCAAGGTGATCGACTTTGGTCTGGCCACCCATGTCTCGGAGGCAGTGCGCTCTGCCTGCAAGCAGACCAGATATTTCAGGGCTCCAGAGATCATCCTTGGCCTGCCCTACAATCAAGCCATCGATAGGTTGCTGGGCTGCATCATTGCGGAGGTATTTCTGGGGTGGCCTCTGTACCCTGGGGCTTCGGTGTACGATCAAGACCTTTTTCGTCGGGGGCTGAGCGAGCCCATAGCCTTCTTGCTGCCAGCAGGTATATGTGACTTGACCCTGGTCACGTACATTGACGTGGCGCTGTGGTTGTGTAGCTCGGCCTTTACTGTTGGAGTTGTAGAGGAAACCCTGTCCGTCCAGCCAGAGGTCccgaagaaaagaaaagaaaaaggtaccTGCCCCAGTCCCGGCCGCGCCCGCCGCGGACCCAGAGGTCCCGACCCCAGCTGCGCCTGCCGCCGACCCAGAGGTTCAGTGACTCAAGATTCAGTGGATCAGGGTTCAGGGGTCTGCGTGCAGAGAAAGATCCTGGCTTGGTTTGACAAGTGTGACTCCGCTGGGCTCTCGGAGCCTGCAACCCCGCAACCCATCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU186027 lncRNA upstream 147645 3216784 ~ 3295868 (+) True G147856
TU186011 lncRNA upstream 304324 3135920 ~ 3139189 (+) True G147842
TU185979 lncRNA upstream 407167 3035019 ~ 3036346 (+) True G147814
TU185974 lncRNA upstream 417724 3025378 ~ 3025789 (+) True G147809
TU185973 lncRNA upstream 420245 3022938 ~ 3023268 (+) True G147808
TU186210 lncRNA downstream 166276 3630582 ~ 3631455 (+) True G147994
TU186231 lncRNA downstream 223657 3687963 ~ 3688231 (+) True G148010
TU186258 lncRNA downstream 264019 3728325 ~ 3759003 (+) True G148036
TU186304 lncRNA downstream 412065 3876371 ~ 3879521 (+) True G148075
TU186359 lncRNA downstream 547348 4011654 ~ 4013403 (+) True G148119
AMCG00000078 mRNA upstream 26956 3403359 ~ 3416557 (+) True AMCG00000078
AMCG00000075 mRNA upstream 335638 3076185 ~ 3107875 (+) True AMCG00000075
AMCG00000085 mRNA upstream 583329 2858153 ~ 2860184 (+) True AMCG00000085
AMCG00000088 mRNA upstream 602478 2839915 ~ 2841035 (+) True AMCG00000088
AMCG00000086 mRNA upstream 653026 2776667 ~ 2790487 (+) True AMCG00000086
AMCG00000081 mRNA downstream 57 3464363 ~ 3469964 (+) True AMCG00000081
AMCG00000082 mRNA downstream 59294 3523600 ~ 3536734 (+) True AMCG00000082
AMCG00000083 mRNA downstream 74382 3538688 ~ 3541156 (+) True AMCG00000083
AMCG00000090 mRNA downstream 183500 3647806 ~ 3680717 (+) True AMCG00000090
AMCG00000094 mRNA downstream 226466 3690772 ~ 3699093 (+) True AMCG00000094
TU185878 other upstream 1039541 2403730 ~ 2403972 (+) True G147726
TU185496 other upstream 2326563 1063085 ~ 1116950 (+) True G147416
TU185369 other upstream 2945002 449652 ~ 498511 (+) True G147311
TU185240 other upstream 3196508 240502 ~ 247005 (+) True AMCG00000032
TU185255 other upstream 3378224 64746 ~ 65289 (+) False AMCG00000025
TU186234 other downstream 228803 3693109 ~ 3695802 (+) False AMCG00000094
TU186257 other downstream 256679 3720985 ~ 3724316 (+) True AMCG00000093
TU186262 other downstream 295873 3760179 ~ 3760624 (+) True G148040
TU186772 other downstream 1970852 5435158 ~ 5435762 (+) False AMCG00000142
TU186901 other downstream 2416717 5881023 ~ 5888027 (+) True AMCG00000166

Expression Profile