RNA id: AMCG00000080


Basic Information

Item Value
RNA id AMCG00000080
length 3235
RNA type mRNA
GC content 0.49
exon number 12
gene id AMCG00000080
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3388190 ~ 3399653 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCAGGATCCTCTGGGATCGCGATGATGGAGGAGGGCTGATGACAGCAGCGGATGAGCGAGTCGTACCAAGACCAAAAACCCTCCAACTGCTGGAAATCAGTGACTGTCACCGCTGCGTCTTTGCTGCTGGTGATACAAAGAAACCGTTATAGCTCCTGTACCGATTCGGATCCGTGTCGTAACAGCTTCATATCAGCAGTGGCGGGCAATATCAAAAAGCAGAAGGCAACTCTCTTAGCAGGGACTGCCAATGTGTCTGGGGCACCAAGGACCTCTGCAAGCACCCATACCCCCACCAACACTGATGGAGGCTCCTCCAGGCCTTCCTCTCAATTTGTGCGGCCTAAAAAGACAGAGCCCGACGACGACCTGCTGTTTGATTTCCTCAACAGCACGGACAAGTCCTTGAATGGGAAGCTGGACGCCAAAAAGGACAAGCCCTGCTCCTCTTCTCAGGGCCTGTCTCGGACTTCAAGCCTGGGCTCCATCTCCATCAGCACCCAGAGCGTCAAGACCTCAGAGGAAGGTTCCAGCAAAGACCCGGGCCAAGTGCCCCAGGAACCAGCTAAAGAGGAGCCGCTCGCCCCGGAAATCACAGCTCCTCCTGTGAAAGATGATGGGCAGAGCCAGGTGCTGTCCAGCCTGCGTCTGGAGAACCAGCTGCTCCGCACCGAAGTGTCCTCTCTCAACCAGGAAATGGCTGTGCTCATCCAGAGATCCAAGGATACGCAGGAAGAACTGAACAAGGCCCGGGCCAGGGTGGAGAAGTGGAACGCTGATCAGTCACGCACAGACCGTACCGTAAGGGAGCTCCGGTCGCAGGTGGACGACCTCACGGAGAGTGCTTCCGCCAAGGACGCGCAGCTGGCAGTGCTCAAAGTGCGACTGGACGAAGCTGACCAACTGCTCAAAGGGCGAACTGAAGCCCTGGAGAAAAGCGAGTTTGCTGCCCGAATGGGGAAGGTGGAGGGGGAGCGGCAGGTCCTGTCCGAGTCCCTGATCGCAGCTGAGAGGAAGAGCGTGGAGGACAAGAGGAGGCTGGAGGAGTCCCAGCAGCAGGCCAAAGTAGCTAAAGCAGCAGCAGAGATGGCCAAGCAGGAGCTGGTGGACTACAAACAGAAGGCCTCTCGAATCCTGCAGTCCAAGGAGAAGCTGATCAGCAGTCTGAAAGAGGGCTCAGGCCTGGATGGGCTGGACGGCCACAGCCCCGGTGCCgtggagctggaggagctgcggCACGAGAGGGACCTGCAGAGGGAGGACAACCAGAGACTGCTGGGCCAGCTGCAGCAGCTCCGCTCTGAGATACAGGACCTGGAGAGTCAGCAGCTGGCAGAGTCCGAGTCGGCCCGGGAGCAACTGCAGGAGCTCCAGGAGCAGCTCGGCGCCCTGAGCAGGgccaaacaggaagtggaggCCGAGctggagagacagaaacagGAGCTTCAGTACATGGAGGAAGAACTGCACCGAACTAAAAACACTCTCCAGAGCAGGATCAAAGACCGAGAGGAAGAAATTCAAAAGCTGCGGAATCAGCTCACCAACAAGACACTGAGCTCCAGCAGCCAGGCGGAGCTGGAGAACCGGCTGCACCAGCTCACCGAGACCCTGATCCAGAAGCAGACCGTGCTGGAGGCCCTCGGCACGGAGAAGAGCTCTCTGGTCTTTCAGCTCGAACGGCTGGAGCAGCAGCTGAAGAGCGTGCAGGGCAGCGCGGGCAACGGCCCCACCATCAACATGGCAGGCATGGAGGGGAACGACGGTGCTCGATTGAGGACTGTGCCCATCCTTTTCAGCGACACAGAAAGCCCAGCCGCAGGGATGTATGGGAAAGTTCGCAATGCAGCAAGTACTATAGACAGATTTAGCATTCGGTTAGGGATATTCCTCCGACGTTACCCAATCGCAAGAGTGTTTGTAATTATATACATGgcCCTTCTGCACCTCTGGGTAATGATTGTACTCCTAACATACACGCCGGAAATGCACCACGACCACCCAGGTGGAAGATAGAAGGTTGTGTCtaatggacatttatttataaaaaaaaaataataaaaaagatttaaaaagctGCTTAACATCAGAATAACCTACCTTTCAAGGAGTTGGGGCCAGCGATTTGCACACAACATAATGGGCAATGGATTTTGGTGTTTCTGATGACCTTTCCCCTCGCCCTGTCTGATAATCTTCCAAAGCTCTCTGTAAAATGAAAGCAGTTCTGCATGGCATTTTACAACACTAAACTGAACTACAGCTCTCACTGGGATATTGCAGGAATGGAAAGTTCTGGAACGTGATCAGGGAAAATAACCTTAAATATAAAGATATGAAgactgggttttattttttatttttcatcttttattaCTTCAgctgtcttttccttttctctttttttcttttcttgtataTATAGAGATGGTGTTTCTTAACcctataaaaatacttttaataaaagttgctGCAGTGGACATTTTGAGTGTActtcaaatactttttgttcTAATACTGGCCAGAGAAGCATTTTAATTCTGACTTACGCTATCTCTGGTGATTAGGTAGACACATTTAGCACAACAAATTGCCAGGTGAGAATACAAACTACTTTGTATATGATTATGATCTGCTTTGTGCATGATCACTAATCTGACATGTAACTCCTAATGTAACGTGTCGACACACACACGGAATCGTGTATGGGTtgtcatgcttttgttttagaaGTAGGGCCCTTTGTTGAAATGGCAAATGGCAAATACACAGGGCTTGATTTATAACATCTGCCAGTCATCTTCAGTGCAGCCCAGCTACCAAGATTATCATTTCCTTATGCCTTAATAGAGACTTTAAACACAGTATCAGTGACTAGGTGGCTTATTGAGCTTCCTCTCGGCAATGAGAAGTGTGCGTTTGCAAGAACAATggcacaataatacaatttctgtCAGGAAACCAAATTTGCAAGTTTATGTACTtcttaaaagtaattataaaaaCCCATTAgactactttttaaaataaatgtgttatgtgAAAATGGTGAAAGGGAGAATCTGAAATTCACTTgatccctttttaaaatatatttatttagtttttgttgtttggaagtcacaaatgcaaataaagatataaatgaaaaagtaattgcatCCAAATGCAGGCTCTGCTAGCTCTAGTACTCCgtgagtttagttttttttttttttgtgaacaatGTCTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186125 lncRNA downstream 79389 3307169 ~ 3308801 (-) True G147921
TU185988 lncRNA downstream 373607 3010249 ~ 3014583 (-) True G147823
TU185941 lncRNA downstream 594861 2790287 ~ 2793329 (-) True G147782
TU185877 lncRNA downstream 984572 2403398 ~ 2403618 (-) True G147725
TU185874 lncRNA downstream 1004976 2383014 ~ 2383214 (-) True G147722
TU186147 lncRNA upstream 63650 3463303 ~ 3463632 (-) True G147941
TU186193 lncRNA upstream 152506 3552159 ~ 3557837 (-) True AMCG00000084
TU186213 lncRNA upstream 242712 3642365 ~ 3642669 (-) True G147997
TU186232 lncRNA upstream 288310 3687963 ~ 3688231 (-) True G148011
TU186263 lncRNA upstream 360649 3760302 ~ 3760617 (-) True G148041
AMCG00000076 mRNA downstream 60550 3308930 ~ 3327640 (-) True AMCG00000076
AMCG00000077 mRNA downstream 82930 3291179 ~ 3305260 (-) True AMCG00000077
AMCG00000097 mRNA downstream 100383 3268369 ~ 3287807 (-) True AMCG00000097
AMCG00000101 mRNA downstream 132601 3238847 ~ 3255589 (-) True AMCG00000101
AMCG00000099 mRNA downstream 151313 3216712 ~ 3236877 (-) True AMCG00000099
AMCG00000084 mRNA upstream 155043 3554696 ~ 3558901 (-) False AMCG00000084
AMCG00000091 mRNA upstream 308730 3708383 ~ 3708970 (-) True AMCG00000091
AMCG00000092 mRNA upstream 326684 3726337 ~ 3735602 (-) True AMCG00000092
AMCG00000105 mRNA upstream 381330 3780983 ~ 3804361 (-) True AMCG00000105
AMCG00000107 mRNA upstream 476711 3876364 ~ 3897220 (-) True AMCG00000107
TU185384 other downstream 2902607 484720 ~ 485583 (-) True G147324
TU185352 other downstream 2995708 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 2996055 387118 ~ 392135 (-) False AMCG00000037
TU186746 other upstream 1939156 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 2661669 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 2751067 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 2809621 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 2816103 6215756 ~ 6216441 (-) False AMCG00000190

Expression Profile