RNA id: AMCG00000084


Basic Information

Item Value
RNA id AMCG00000084
length 1188
RNA type mRNA
GC content 0.57
exon number 2
gene id AMCG00000084
representative False

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3552159 ~ 3558901 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGTTCCCAGACCATAGCCGACAGTTGCTGCAATGTCTGAGTCAGCAGCGTCACCAAGGTTTCCTCTGTGACTGTACTGTTCTCGTCGGAGAGACGCGATTCAAAGCCCACAGAGCCGTGCTGGCCTCTTGCAGCATGTACTTCCATCTCTTCTACAGGGACCAGCTAGACAAAAGGGACGTTGTGCTTCTGAACAGTGACATTGTCACAGCCCCGGCATTCAGCCTGCTCCTTGAATTTATGTATGAGGGGAAGCTGGAATTCAGCTCCCTGCCTGTGGAGGATGTTCTGGCGGCTGCCAGCTACCTTCACATGTACGACATTGTAAAAGTGTGCAAAGGCAAGCTAAAAGATAAGGAGCTGGGCTCTTTGGATGAAAAGATTAACGACGGGATAGTGCTCAGCTGCCTGGAAAAGGAGACCACTTCAGAgggggagcagcagcagcagccgcaaAAGAGGCCCCCCCCGGCAGATGAATTTGACACAGACAACAGCGAAGTGAGGCTTGCTGTCACGGATTGTGAAAGGTCTGCACAGAGCAGGCAGAAGGCGAACGGTCACCCTGGCGGGTCCCCGGACCTTGTAGGTGTCAATTATGTGTCAGTGGAGGCCGAGTCCTGCATCCGAacagctggaaaaacaaaagctgatgTCAGTAGTTCCACGGCATCTCTGTCCCAGAGGTCTAGGGCTTCAGATGACACGGACTGCGCTCTGGATTTGTCTTTCAAGCCTCTGTCTAGCAGAGATTCCTTACACCCCTCCTACGTCTCGGGACAGCTGGCTTTCGACAGCCAGCAGCAGGGCACCGAGCCACTTGTTAAAGACGAACACGACTTGCTGTCAGAGCAGGAGGACAGTGAGCCGATGAGCCCAGAGAGCCAGCGCTTTGGGAATAGCGCCAGGAGCTCAGTGGTGACAGGGTTCGCTGCCCTCTTCCCAGGCAACAACGGCTCCTCGGCGGCACTGCGCTCTCGAGAGGACGACTTGATGgagcaggagggggagggggggtgcgcagggggagcaggagaggaggagggggtggtgCTCGGGGGCAgcgaagaggaagaggaggacgaTTTAGCCTCTTCGGACATCTCCACCTCTAGCGGGGTGCTGCTGCCCCCGGGCCAGCAGATCTGCGTGTGTCCGCTGTGTAGCAAGCATGCAGGTCTctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186147 lncRNA downstream 91064 3463303 ~ 3463632 (-) True G147941
TU186125 lncRNA downstream 245895 3307169 ~ 3308801 (-) True G147921
TU185988 lncRNA downstream 540113 3010249 ~ 3014583 (-) True G147823
TU185941 lncRNA downstream 761367 2790287 ~ 2793329 (-) True G147782
TU185877 lncRNA downstream 1151078 2403398 ~ 2403618 (-) True G147725
TU186213 lncRNA upstream 83464 3642365 ~ 3642669 (-) True G147997
TU186232 lncRNA upstream 129062 3687963 ~ 3688231 (-) True G148011
TU186263 lncRNA upstream 201401 3760302 ~ 3760617 (-) True G148041
TU186436 lncRNA upstream 671741 4230642 ~ 4231328 (-) True G148181
TU186460 lncRNA upstream 988923 4547824 ~ 4548060 (-) True G148198
AMCG00000080 mRNA downstream 155043 3388190 ~ 3399653 (-) True AMCG00000080
AMCG00000076 mRNA downstream 227056 3308930 ~ 3327640 (-) True AMCG00000076
AMCG00000077 mRNA downstream 249436 3291179 ~ 3305260 (-) True AMCG00000077
AMCG00000097 mRNA downstream 266889 3268369 ~ 3287807 (-) True AMCG00000097
AMCG00000101 mRNA downstream 299107 3238847 ~ 3255589 (-) True AMCG00000101
AMCG00000091 mRNA upstream 149482 3708383 ~ 3708970 (-) True AMCG00000091
AMCG00000092 mRNA upstream 167436 3726337 ~ 3735602 (-) True AMCG00000092
AMCG00000105 mRNA upstream 222082 3780983 ~ 3804361 (-) True AMCG00000105
AMCG00000107 mRNA upstream 317463 3876364 ~ 3897220 (-) True AMCG00000107
AMCG00000106 mRNA upstream 361694 3920595 ~ 3928012 (-) True AMCG00000106
TU185384 other downstream 3069113 484720 ~ 485583 (-) True G147324
TU185352 other downstream 3162214 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 3162561 387118 ~ 392135 (-) False AMCG00000037
TU186746 other upstream 1779908 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 2502421 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 2591819 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 2650373 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 2656855 6215756 ~ 6216441 (-) False AMCG00000190

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000060_01069853_01071229.mRNA True 2087 mRNA 0.55 1 CI01000060 1069783 ~ 1071869 (-)