RNA id: AMCG00000088


Basic Information

Item Value
RNA id AMCG00000088
length 396
RNA type mRNA
GC content 0.56
exon number 2
gene id AMCG00000088
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 2839915 ~ 2841035 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGTTTCTACTAAAATCAGTTTCACAGTGCGGAGTATTTTGGATTTACCGGAGCATGATGCGGAAACGCCACACAACCATTCCCCGGAAAGTTGTTCCAGCTCGTCTTATTCTGAGTGGCTAGACTGTGACAGAAAGACTGACCTCGGCCAGGCACCACTGGTGCGCAGAGTCGTGGTCCCAGTTCTGGTTCGAGACGGAAAGCCATGCCACACCTGCGCTCTGGATCCGGCGCGGTTTCAGGACAAGGCGGGCTGCGCCATCCCCAGCACCGCTGCGCCcgtctccttctctctccatggGTACCAGTCCCTCCAGCATCCGGCGCCTCTGACATTGTTTCCCAGCTATCAGCACTTAACAAACCCAGCAGCATCCAGACACCACTGGGCT

Function

GO:

id name namespace
GO:0021514 ventral spinal cord interneuron differentiation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185893 lncRNA upstream 314494 2525191 ~ 2525421 (+) True G147739
TU185889 lncRNA upstream 360957 2478710 ~ 2478958 (+) True G147735
TU185838 lncRNA upstream 471470 2301487 ~ 2368445 (+) True G147689
TU185836 lncRNA upstream 481778 2291140 ~ 2358137 (+) True G147688
TU185970 lncRNA downstream 169048 3010083 ~ 3014819 (+) False G147806
TU185968 lncRNA downstream 169225 3010260 ~ 3016145 (+) True G147806
TU185972 lncRNA downstream 179360 3020395 ~ 3021571 (+) True G147807
TU185973 lncRNA downstream 181903 3022938 ~ 3023268 (+) True G147808
TU185974 lncRNA downstream 184343 3025378 ~ 3025789 (+) True G147809
AMCG00000086 mRNA upstream 49428 2776667 ~ 2790487 (+) True AMCG00000086
AMCG00000074 mRNA upstream 231924 2572779 ~ 2607991 (+) True AMCG00000074
AMCG00000071 mRNA upstream 704017 2128584 ~ 2135898 (+) True AMCG00000071
AMCG00000070 mRNA upstream 724748 2114661 ~ 2115167 (+) True AMCG00000070
AMCG00000073 mRNA upstream 781150 2036023 ~ 2058765 (+) True AMCG00000073
AMCG00000085 mRNA downstream 17118 2858153 ~ 2860184 (+) True AMCG00000085
AMCG00000075 mRNA downstream 235150 3076185 ~ 3107875 (+) True AMCG00000075
AMCG00000078 mRNA downstream 562324 3403359 ~ 3416557 (+) True AMCG00000078
AMCG00000079 mRNA downstream 602478 3443513 ~ 3464306 (+) True AMCG00000079
AMCG00000081 mRNA downstream 623328 3464363 ~ 3469964 (+) True AMCG00000081
TU185878 other upstream 435943 2403730 ~ 2403972 (+) True G147726
TU185496 other upstream 1722965 1063085 ~ 1116950 (+) True G147416
TU185369 other upstream 2341404 449652 ~ 498511 (+) True G147311
TU185240 other upstream 2592910 240502 ~ 247005 (+) True AMCG00000032
TU185255 other upstream 2774626 64746 ~ 65289 (+) False AMCG00000025
TU186234 other downstream 852074 3693109 ~ 3695802 (+) False AMCG00000094
TU186257 other downstream 879950 3720985 ~ 3724316 (+) True AMCG00000093
TU186262 other downstream 919144 3760179 ~ 3760624 (+) True G148040
TU186772 other downstream 2594123 5435158 ~ 5435762 (+) False AMCG00000142
TU186901 other downstream 3039988 5881023 ~ 5888027 (+) True AMCG00000166

Expression Profile