RNA id: AMCG00000091


Basic Information

Item Value
RNA id AMCG00000091
length 588
RNA type mRNA
GC content 0.54
exon number 1
gene id AMCG00000091
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3708383 ~ 3708970 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGTGAAATCGCACAGCGGAGCCACTAGTGCCACAGATGAGGATAATGGCGAATACCAGCTGGTGGAGCATGAGATGCTCTGCTCCAGCAGAAACCTGTTTGAAGTCCTGGAGTTCCTGGGCCGAGGCGTCTTTGGTCAGGTGGTGAAGTGCAGGAATAACCGCACCAATGAGATTGTGGCCATCAAGATCCTGAAGAACAAACCCGTCGAAGGCAGCATCATGGCCAGGCTGAGTAGAGAGAGCCCTGACCAATACAAGCTTGTGCAGGCGTACGAGTGCTTCAAGTACAAGGACCACTTGTGCCTGGTGTTTGAGATGCTAAATCATAACCTGTACGACTTCATCAGCTTCCAGACCCTGCCCCTCAAGTACATCAGGCCCATCCTGCAGCAGGTCGCCACTGCCCTGAGAAAGCTGGAGAGTTTGGGGATGATCCACACCGACCTCAAGCCTGACAAAATAATGCTGGTGGATAATGCAGCCAGGCAGCCCCTCAGAGTCAAGGTGATCGACTTTGGCTTGGCTATCCAGGTCTCGGAGGCAGTGCGCTCTGCCTGCATGCAGGCCACATGTTACAGGTAA

Function

GO:

id name namespace
GO:0045634 regulation of melanocyte differentiation biological_process
GO:0016310 phosphorylation biological_process
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186232 lncRNA downstream 20152 3687963 ~ 3688231 (-) True G148011
TU186213 lncRNA downstream 65714 3642365 ~ 3642669 (-) True G147997
TU186193 lncRNA downstream 150546 3552159 ~ 3557837 (-) True AMCG00000084
TU186147 lncRNA downstream 244751 3463303 ~ 3463632 (-) True G147941
TU186125 lncRNA downstream 399582 3307169 ~ 3308801 (-) True G147921
TU186263 lncRNA upstream 51332 3760302 ~ 3760617 (-) True G148041
TU186436 lncRNA upstream 521672 4230642 ~ 4231328 (-) True G148181
TU186460 lncRNA upstream 838854 4547824 ~ 4548060 (-) True G148198
TU186647 lncRNA upstream 1365460 5074430 ~ 5077246 (-) True AMCG00000161
TU186704 lncRNA upstream 1527898 5236868 ~ 5240683 (-) True G148364
AMCG00000084 mRNA downstream 149482 3554696 ~ 3558901 (-) False AMCG00000084
AMCG00000080 mRNA downstream 308730 3388190 ~ 3399653 (-) True AMCG00000080
AMCG00000076 mRNA downstream 380743 3308930 ~ 3327640 (-) True AMCG00000076
AMCG00000077 mRNA downstream 403123 3291179 ~ 3305260 (-) True AMCG00000077
AMCG00000097 mRNA downstream 420576 3268369 ~ 3287807 (-) True AMCG00000097
AMCG00000092 mRNA upstream 17367 3726337 ~ 3735602 (-) True AMCG00000092
AMCG00000105 mRNA upstream 72013 3780983 ~ 3804361 (-) True AMCG00000105
AMCG00000107 mRNA upstream 167394 3876364 ~ 3897220 (-) True AMCG00000107
AMCG00000106 mRNA upstream 211625 3920595 ~ 3928012 (-) True AMCG00000106
AMCG00000115 mRNA upstream 268746 3977716 ~ 3979326 (-) True AMCG00000115
TU185384 other downstream 3222800 484720 ~ 485583 (-) True G147324
TU185352 other downstream 3315901 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 3316248 387118 ~ 392135 (-) False AMCG00000037
TU186746 other upstream 1629839 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 2352352 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 2441750 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 2500304 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 2506786 6215756 ~ 6216441 (-) False AMCG00000190

Expression Profile