RNA id: AMCG00000092


Basic Information

Item Value
RNA id AMCG00000092
length 396
RNA type mRNA
GC content 0.49
exon number 4
gene id AMCG00000092
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3726337 ~ 3735602 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTATTTGAAACCCATCCAGAATGCAAAGACGTCTTCTTCCTGTTCAGAGATGTGGAAGATTTGGAGAGACTACGGACAAGCAAGGAGCTGAGGGCTCACGGACTACGGGTGATGTCCTTCATCGAGAAGAGTGTGGCGAGACTCGATCAGCTGGACCGCCTAGAACAGCTGGCACTTGAGCTGGGAAAGAGCCACTATCGATACAATGCTCCTCCGAAGTACTACGGGCCAATCCTGAAAGAGAAGTGGACCGCTGAAGTGGAAGAGGCATGGAAGACCCTCTTCCTGTATGTGACCAGAATAATGAAGAAAGGATATCAAGAGGAGGAAAAGAATAAGCGCAACACTGTTGTCATCTCCAGCAAGGAGAGGCCcgacaaaaaaaacacagctatt

Function

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0001666 response to hypoxia biological_process
GO:0016020 membrane cellular_component
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186232 lncRNA downstream 38106 3687963 ~ 3688231 (-) True G148011
TU186213 lncRNA downstream 83668 3642365 ~ 3642669 (-) True G147997
TU186193 lncRNA downstream 168500 3552159 ~ 3557837 (-) True AMCG00000084
TU186147 lncRNA downstream 262705 3463303 ~ 3463632 (-) True G147941
TU186125 lncRNA downstream 417536 3307169 ~ 3308801 (-) True G147921
TU186263 lncRNA upstream 24700 3760302 ~ 3760617 (-) True G148041
TU186436 lncRNA upstream 495040 4230642 ~ 4231328 (-) True G148181
TU186460 lncRNA upstream 812222 4547824 ~ 4548060 (-) True G148198
TU186647 lncRNA upstream 1338828 5074430 ~ 5077246 (-) True AMCG00000161
TU186704 lncRNA upstream 1501266 5236868 ~ 5240683 (-) True G148364
AMCG00000091 mRNA downstream 17367 3708383 ~ 3708970 (-) True AMCG00000091
AMCG00000084 mRNA downstream 167436 3554696 ~ 3558901 (-) False AMCG00000084
AMCG00000080 mRNA downstream 326684 3388190 ~ 3399653 (-) True AMCG00000080
AMCG00000076 mRNA downstream 398697 3308930 ~ 3327640 (-) True AMCG00000076
AMCG00000077 mRNA downstream 421077 3291179 ~ 3305260 (-) True AMCG00000077
AMCG00000105 mRNA upstream 45381 3780983 ~ 3804361 (-) True AMCG00000105
AMCG00000107 mRNA upstream 140762 3876364 ~ 3897220 (-) True AMCG00000107
AMCG00000106 mRNA upstream 184993 3920595 ~ 3928012 (-) True AMCG00000106
AMCG00000115 mRNA upstream 242114 3977716 ~ 3979326 (-) True AMCG00000115
AMCG00000118 mRNA upstream 277637 4013239 ~ 4037286 (-) True AMCG00000118
TU185384 other downstream 3240754 484720 ~ 485583 (-) True G147324
TU185352 other downstream 3333855 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 3334202 387118 ~ 392135 (-) False AMCG00000037
TU186746 other upstream 1603207 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 2325720 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 2415118 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 2473672 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 2480154 6215756 ~ 6216441 (-) False AMCG00000190

Expression Profile