RNA id: AMCG00000097


Basic Information

Item Value
RNA id AMCG00000097
length 3503
RNA type mRNA
GC content 0.45
exon number 12
gene id AMCG00000097
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3268369 ~ 3287807 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGTGTTAGGTGGCTGGTCGGGTCATAGCTGTATTACTGGGATGGGTGGAGCACAATGATCATACTTGATCAGATCCACCTGTCTTCAGTATAGACAGCTTCACTAGCATGGGATCAGGTTGGCTGTGTTATAAGCTGAAATGGCCCTTCCTTTTGTCACTGCAGGTTTCCTCAGGAGCTTTAGTTCACTCACAGATGGAGACTTGTTAGGATCAGAAGACCAGATGTCTGACTTTGCCTCTCTGTTGTGGTATGCAGGGCATTAGCAAGTACAGTTTCCAATCATAAAGGGACCAGCTTCACGATTTGGCTCTGCATTAAAGCCAATAGgaatgagtgtgtgtctgaAGTATAGAAGCTTGGACTGGTGAAGACACAAGCAGGGAAAGATGCAAGTACCAACCTTAAACCAACACTTATTCCATGTCTATTGAGAATACCATTGGATATCATCACAATTCGACAAATCTAAGTTTTGCTCTGGTCCTTGTTGCTGCTTGCTGAGGGCTCTGTTCTGCGTTTCTCATACCGTTACTGACTTTGGTAACTAAGCCATGGCAGCTGAGTTCATAAAAAACTGCTGTAAGGGTCTGATGTCCAAAGAGAAGGAACAGGATCCGGAGCCTGAAGTCTTGCCCGAAAACACCGTTCCTGACAATATAAAGGGCGGAACAGAGAGTGAGAGGTTGCCTGGAGATCCCaattttggaaagaaaagaGTTGGCTGTTCAGAGGACTATCTGCTTTCAAAACTACCTCCTGATGGGAGAGAAGTCCCGTTTGTTGTTCCAAGCTTCAAGTCTTCCTACATCCAGCCCAGTCAGCACTACCCTGGGCACCAAGAAAGCCTCCAAGGCGCAGCCAGGACAACCTACactgacagaaagacagagcTTTCTGCATTGAGTCAGGCCACATATGACCCGGATGTAGTCTTCCATTCCAACTACATCTTGCACCACGTATCCCCTGGCCAAGCTCGCCACGTCTTCCCCAAAACCAAGGGAACGAGCCTATATGGATCTGTGTGGGATTTGAAAAGTGGCAAACCGCTTGCGAATCCAGGCTTGAGCAACTCCATGTTTGACCTCAGTCATCTCCATGGCAACATGCAGCGCTATGACTCGGTGTCCAGTGTCCGGAGCAGCGCTTCTTCTATGAGAGACTCACTGGGGAGCAGCCGCAGTCAagAATCTATAACACTCTCAGGAGATGAAAGGGAGCTGGGGAAACTCAATGTGAAACTGTGTTACCAGGAATCTTTGGAGCAAATCTGGATTACTGTAGTCAGGTGCAAAGACCTGCCTTTACCAATGGGAGATGGAGACCTACAGAGAGTCAGCATCAAAGGAATTATAACCTTAGCCAAGCCAGTCCAGTTCAAATGCTCAATAAAAGAAGGCTCCTCTGACATGGAGTTCCAGGAGACCTTTGTGTTTGCCCTGAAGCTCCAGCAGTTGCAGACGCAGGGCCTGATCTTCAAAGTGCAGACCCACCTTCCCCGCAAGAGGACCCTGGGGGAATGCGCCATGACACTGCGGCAGCTCAGCTCCCAGGAGGCCGAGTACTGGCTGGACATCACCCCACCTTCCAAAGCCCCGATCTGTCATGCTGAGCTCCACATCGCCACTTGTTTCCAGCCAATCAGTGGCCGGATTCAGCTTCAGATCCTGGGAGCCCAGAACCTGCCCAGCTCCACAACCCCTATGAGCCTTGGCTTCTTCGTCAAGATTGAGATGCACAACATGGACGGGCTGGTGGTGAAAAAGAAGACCCGCGTTCTGAAGTCATCAGGGGGGCAGGTGCGCTGGGGGGAGACCTTCCTTTTCCCCATTGCCCAGCAGGAGCCGGGCCTGCGCTTCATGGTGCGCCTTTATAGCCGCAGCTCTGTGAGAAGGAAACAATTCCTGGGTCAGGTACACATTGGCTGTGAGAGCACGACGAACGACGCCATCGAACAGTGGAGGGACGCCATGACAAACCCAGAGAAGGTGGTGGCTGTGTGGCACAACCTCACTCCAAGTTGAAAAAGCCCCTTGAACTGCGAAGACCTCCTCACGGTATATGGTTTATAACAAACCACCACCTGGAGCCCACAGGAGAAAAACTGCAACCTTTCAAACGTAAAGGCGAAATAATCATTGACGTCTGACAGAAGACTAGCCCTACACTTTAATGGACTCTGGAGAGAGATATTCCTTTCTTTTATCTTCAGtacaaaaccttttttgttctttgttcaaTGCAGACATTGTACTTTTTAGGTCTAGAAGAGCAATACACCCGCTCTGTTAAAAGTTTGTCCAGCCGCCCAGTCTCCCAACCCAGAACTGTCTGTAACTGCTCGGACTCAGACACTCTGACCTCACTGTGTGGTTGACATCTACAACAGTTTCTCTGTGTGTCGATCGGTGGATTACATGAGCACTGGAGCCAATGacgggaaagaaagaaagtgaaaaacGGTTTACTGAGTACAGGCTTGGCCTTTCTACCACACATGATATCAGTGTCATTGTGCATGATATTACTAGAAATGTAGCTTAAGTGACTTggtacatatatttatgtattttttctgtgaagGGCATCTTGGGATGAATCTCAGCTGAAGGGGGATTGTGCAGTTACCTCAAGTGTGTTCAGAGAAAACAATCCTGGGATAATGTATGAACAAATAAGGTTGGTTTTATACCTTTCCACtgccacacaaaacaaaagttcattaacagtttttgtttggACTGTTAAATCACCAGCACACAGTAGGGCCAGTGCTGTAAATTCAGTCTGAGATTTAGTACCATGAGTTCCTTATGCTTATGTATATACTTTTAGAGCCAATACCTTAGTGCTATAAGTAAATGTAATAGTTTATAATTATGTAGGAAAATATGAATTGGCAGTGTGCAATATTTAGAATGTATTATTGCAGGGGGGAAGAAAGACTTGCATTTTGTAGCAACATTTTTCAGCAGAGACCAATATTATTTATGATCAGACAAATTAAAGTTATGTCTTTCATTGCATTGTCTCTATGCTGAGGATTCCTCGAGATAAGTATAAGGAAAAGGTAGAACTGTTTTTTAAAACCCAtagagattgttttttaaatgggaaatcTTAAGTTTTATCAGTACAGCTCTATAGTAAACTGTATAACTCCAATACCCCTGAGTAATATCCTGTAGAGACATATGCTacacataaagaaaataactacTTAATAAGGAATAAACTGCAATAGgcttcattgtttttaatggggATTTTTTATTCCTgaacatgaaaaatgtttttgtattgttctccTATCACACTTTTGTATTCTACACTTATCTGTTATATTTGTTAGAAGGAAGACTACTGGCCCAACTGTTTTCAGACATCAATACATACAGTACCAGCCATGACTATGCATAGTACTTGTGCATGTCTAACATATCTTTAGTCTGGAAAACCctaataaaagttttttttctttttttgcattgGTAAAACA

Function

GO: NA

KEGG:

id description
K17287 TC2N; tandem C2 domains nuclear protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185988 lncRNA downstream 253786 3010249 ~ 3014583 (-) True G147823
TU185941 lncRNA downstream 475040 2790287 ~ 2793329 (-) True G147782
TU185877 lncRNA downstream 864751 2403398 ~ 2403618 (-) True G147725
TU185874 lncRNA downstream 885155 2383014 ~ 2383214 (-) True G147722
TU185855 lncRNA downstream 904127 2301198 ~ 2364242 (-) True G147704
TU186125 lncRNA upstream 19362 3307169 ~ 3308801 (-) True G147921
TU186147 lncRNA upstream 175496 3463303 ~ 3463632 (-) True G147941
TU186193 lncRNA upstream 264352 3552159 ~ 3557837 (-) True AMCG00000084
TU186213 lncRNA upstream 354558 3642365 ~ 3642669 (-) True G147997
TU186232 lncRNA upstream 400156 3687963 ~ 3688231 (-) True G148011
AMCG00000101 mRNA downstream 12780 3238847 ~ 3255589 (-) True AMCG00000101
AMCG00000099 mRNA downstream 31492 3216712 ~ 3236877 (-) True AMCG00000099
AMCG00000096 mRNA downstream 60557 3198879 ~ 3207812 (-) True AMCG00000096
AMCG00000098 mRNA downstream 91250 3136030 ~ 3177119 (-) True AMCG00000098
AMCG00000095 mRNA downstream 154228 3113119 ~ 3114141 (-) True AMCG00000095
AMCG00000077 mRNA upstream 3372 3291179 ~ 3305260 (-) True AMCG00000077
AMCG00000076 mRNA upstream 21123 3308930 ~ 3327640 (-) True AMCG00000076
AMCG00000080 mRNA upstream 100383 3388190 ~ 3399653 (-) True AMCG00000080
AMCG00000084 mRNA upstream 266889 3554696 ~ 3558901 (-) False AMCG00000084
AMCG00000091 mRNA upstream 420576 3708383 ~ 3708970 (-) True AMCG00000091
TU185384 other downstream 2782786 484720 ~ 485583 (-) True G147324
TU185352 other downstream 2875887 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 2876234 387118 ~ 392135 (-) False AMCG00000037
TU186746 other upstream 2051002 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 2773515 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 2862913 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 2921467 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 2927949 6215756 ~ 6216441 (-) False AMCG00000190

Expression Profile