RNA id: AMCG00000105


Basic Information

Item Value
RNA id AMCG00000105
length 7208
RNA type mRNA
GC content 0.45
exon number 15
gene id AMCG00000105
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3780983 ~ 3804361 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtactttttaactttctttctttcttacatCTTTCATTTTCAGGATTACCTGGCTCACATTATCGATACAGGTGACCTCCCAATCCGGCCCGACCAAGTGTGCCACCTGTTTGGAAACATTGAGGATATCTATGAATTCAACAGtgaaCTCTTGCAGTCTTTGGATATGTGTGAGAATGATCCTGTAGCAATCGCAAGGTGTTTTGTAGACAAGagtGAGTACTTTGAGATCTACACTCAATACTGCACAAACTACCCCAAcTCAGTGGCAGCACTGACAGACTGCATGAGGAGCAAGACGCTGGCCAAGTTTTTCCGGGAAAGACAGGCCTCGCTGAAACGCTCCCTCCCGCTGGGCTCCTATCTGCTCAAGCCGGTCCAGCGCATCCTGAAATACCACCTGCTGCTGCAGGAAATCGCAAAGCATTTCGATCCTGAGGAGGAGGGCTATGAAGTGGTGGAGGAGGCGATTGACACCATGACGGGTGTGGCCTGGTACATCAACGACATGAAGAGGAAACATGAGCACGCCGTCAGACTGCAGGAggtccagtccctgctgatcaACTGGAAGGGTCCTGATCTGACCACGTATGGGGAGCTGGTCCTGGAGGGGACGTTCCGGGTTCACCGCGCCAAAAATGAGCGCACGCTCTTCCTCTTCGACAAGATGCTGCTCATCACCAAAAAACGAGGAGAACACTATGTCTACAAGACGCACATCACGTGTTCCACCTTGATGTTGATAGAAAGCGCAAAAGACTCCCTGAGTTTCAGCGTGACGCACTACAAACACCCCAAGCAGCCGCACACAGTCCAGgccAAAACTGTTGAAGAGAAAAGACTGTGGACCCACCATATTAAAAGACTCATTCTGGAGAACCACCATGCTATCATTCCACAGAAGGCAAAGGAAGCCATCTTAGAAATGGACTCCATATACCCAAGCAAATACAAGTACAGCCCAGAGCGGTTGAAGAAAGCCTTGTCATGCCATACAGATGACTTTCCGGTTGGGGAGAGGCAAGGCCGCAGGCGTTCTGaaCCTGCTAAGCATATTATAAAGAGCACTAAAGAAAGAAATGTTTGTAACTTCATGCAGCACGCAGACAGTGAAGGGGCCCTACAGGCTGACAGTGGCTCTGTACAAGCTGGAGCTAGTGTCAGCAGCTCAAGCCTAGGTGAGCCTGAGAGGCCTAGTATGGAAGAGGATGAGGAGAGAACAGACTGTGAAGAACTTGGCCTGCGCAAAGATTCTCTCGAGCAGCTGAGCCCTAGTGACAGTGAAGAGGCTGGTCACGGGCTACAGCTCTCCTCGGGTGCAGCTGAGGAGGGGGAGAATGAGGAGGACGAGATACTGATGGGGGACGACCAGGTAGCAGACTTTGCCAGCTCAATGCTGGCCGCCATCTCCTGCTGGCACTATAGGGCCAGGGCTTTGCTTTTCGCTCGGTTCACAACGGACGAAGAAGGGTGTGACATTATAGAAGAAAATGGCTTCAAGCGAGAGAACCAGCGGTTGTCTGGTCAAGAAGAGATGTTGGAGACCATGGAGGGCACCTCTGTCACTCAGCAGACTGCTGGAGGAGAGGAGGCACTGCAGGACAAGGCAACTCAGTCAGAGAATATAGAGCAGGCTGTGGAAGATCATCCTTCTGACGGACAGGCAGCTGTGATGTCAGAGCTGCTCTGTGAAGCTTTAGCAGGCCCCGAGAGCTCTGAACCCAAGGACACCCCTCTGGAGACAACTGAGGAGATAACTGGGGAATCGGCACCTTCAGACAAGGCAGAGGAAGTGAAGACCCTTAGCAGTGGGGAGTCTTccgaagaggaggaggaagagacgTCGACAGAGCACGAGCCCAAGAGCATTCTGCCCCCGTCTGTTTTAGACCAGGCCAGTGTCATTGCAGAACGGTTCGTCAGCAACTTGTCCAGGCGGGGTAGCTTGATAGCAGAGGACATTCGTTCACTCGGTTGCCCATCTCCGAGGTTGACCAGCAGAAGCAGTAGTGTTATGAGCTTGGAAGCCGTGGAGAAAGCACAGAGAATCAGCAACACCGCGTCTGAAGCATCTCTCAACATTGTCGTACAGGACTCTGTGGGACACCAAGCTACTTCCTGCCAAGACCCCACTATACTGTCCCCAGGCTCGGACAACCTCTTTGAGGTGGACAGAACGCCTTTTAGGAGGAGGGACTCTACTCTCTCCAAACATGACCGCCTCCTCATCAACAAGATCAAGAACTACTATGAACACGCAGAGCACCAGGATGCCAGCTTTAGTATCAAGCGGAGGGAAAGCTTGACCTATATTCCTGCTGGACTGGTCAGGAACTCCGTTTGTAGGTTGAACAGTATCCCCAAAGACGATCCTGCTCCAGTCGTAACTTTGAAGAAAGCAGTCAACAGCTCTGATTACAGGGCTGTCGACTCGGGACGCAGACCTCCATCGTGGACAGTCTTTGATCTTCCACCCTTAGAGAAGGATTTTCAATCAAAGCCTTTAGATGTAGAAATCGAGGAATCGTTGAACTTTCCAAGCAGCATGGCCAGGTCACATGATTTGGATGAGGAGTTCAAGCCTTCAGCAGAGATGATCAAAGTGTGGCAGGAGATGGAAAAGGAAGTGAGTGGTGCATCCAGGAGGCCGCAGAGCAGTGAGAAGGCACCTGAAGGGAATCTCTCAAGAGGAGCAAGCCCAAGACTCTCTAGGAGGGGCCAGATGAGTAATGGCAGCCCACAGACAGAGTACAATGAATCCCTGATGATACTTGAAGAAGGTGATCTAAGCACAATCACGGAAGAGTCTTCTCACTCGTCACCAGAGAAGATCTCTCCAACTGCTCTGGGACACGAGAGAATAGGAAGCTTGTCTGAAAGACACAAGGGACAGGAGGAGAGCACTGGAGTGAGGGTCTCCAGAGCACCGATCCCAAGGATCATCCATCTCAGGTCAGGCATTGAGGACGAGATGCTGCTGCAAGATGTGGAGAAAGTGAAGAACAAGGTCTTCCAGCTGGCACGCCAGTACAGCCAGAGAATCAAGAGCACAAGGCCGGTGGTGACgcagagaggcagggagggggagggccAGCTGAATAAGAGAAACCTGCCGGCAGTTCAGGAGGAGAAACCAGAGAAAGAAAACCGAGGAAAACCCAACTTGACACTGGCTCTCAATTCGTATGATCAAGTCACCCTGCAGGAGGTGAGCCCCACATCTCAGGTGAGATCTCCCACGCTGCAGTGCACCAGCCCTGCTCGACATGCCAGCTGCAGCCCGGCACGTACGCCGAGCTCGGGAGTGGGCAGTCCCCGTGTGCTATCCCCCAGCAGAGCACGATCCAAGAGCCCCCTCAGTCCTGTGCAGGCCGAGAGCTTCAACTGGCCGGATGTGCGTGAGCTGCGTTCAAAATACGCCCACCGGGGTCCTGACCGAACACAGTTAAAAGTAATACCAGTGGGCAGGAGCTGTTCTGTTCCTGAGAAGATGGTAGAAAACTCAGTGGGCGGCCCAGAATGGAGGCGCTCCAGTTACACCTCTGGGGCACCAGTTTCGTTGGAAGCCCGTGGAAGAACAGTTTCCACCAGCTCATCTGAGCATTGGGGCTCCAGGTCTCTGCAGAGGGACTGTGGAGACTGCCTCAGCTTTCCCCACGCCAGGGTCTGCAGGGCAGGCTCCCTGGACCAGAGGATAAGCAGCCTCCAGCTCAGCGAACTCCAGAACCTGCGCAACAAAGACCTGAAAAGCACCTACTATGTTTCGGCTGAGGCCACACTACCTAACGAGCAGAAGGTGATCGTCATGGAGAAAGTTCCAGAAAAAGAGCTGGAGACTGATGCTCCTCGGGCAGGTGAATTGGCTTTGGACACAGATGACAGCTTTGTTCAGATCAGGTCTCCCACCAGCAGGGAGAAGATCTCCATCATGGCGGTCATCGAGCGGTGCAAGGCCTACCAAGAGTCAGAAGAATACCgccagagagaggaggggagcaAGACTGAGCACGCCCCCCGTGGTGGGAAAGCCCGAGAACCGGAGAGGGGCGCCCTTGCCAGCGAGGTGGACGCAGAACCCCTGAGGGCCACCGCGAGTGCAGCAAAAAAAGCTGAAAGTAGCCAACAGAGTATGGTAAAAAACCTAAGAGAGAGATTCCTGAATTTAAGCTCAAACatataaacactttaaaacttttttttttttttagtttttttaactttaattttaaaagcactgaaatCAACCTACAATGCCCTCAGTAAAAACCCCAAAAAAGGagatttgcatttagttttttttttcttctgattgGTCTGCTTCCCCTtggtatgtgtgtatatatatatgtatgtctctgtgtgtgtgtgtatatatatatatatatatgtaagttcTAAGATTTCACTTTGGCTTGTCTTTTTGCTGAACATTACTCAGAGGAATAAGATGTACGCTGTGTTAATAGTAGTGTCATCGATCATAAAAACTTGTGCaattttttcctcattttgcCTTCAACATTTGTATTCCTCTTTGTCTTTACACAGGTATCACCTTACAGAATTTCTTTATGTAACTACATGCACTGTACACCAAGAGCAATACGTTTGCTTAATTagcattttcttaattataaaCAGCCACTTGTTTTTTAAGGATGTGTGCTGGCCTAACAACCATCACCAACATCTTGAGGGAAAATGGACCAATCAAGAAAGGTCTTCTTATTGTTGTATCTGATGTctgaaacataattattttggCTTGTATGTAATATTGGAGACTGTATAAAGgttctgaaaataatgttaaattacaCCAGGCTtccattgtaaatgtaaaacttCTTTTGTATGTATGCACATTTTGTGTTCTAGTGCTAGCTATTATGTTTTACATCAGATGCAGAAAGGTTAAATTATAGAGGGGCGAAAGGTTTTTGGTGAGCTTCAGAAATTTGCCTGAAAACACAGGTGGGATCACATGGCCATACAAATACgcaacaatttagttttttttacattaaactgCCATGATGTGACAAAATTCCTGGTCTTCCATAAAATTGCTCAGTAATGTAATCCTAAGGAAAGAAGACCAGGGACTTTTGTCTCTAATCTTCTcgttttttttgtatgaaaaatTCACATAAATCCTCCTAAAAGTCAAAGGAGAACGATTGGAAAGAAAATGCGTCACGTATTGCTAATTTTGAGTTCCACAGAAGTCCCTTAAACATGTACAGCAGCTAGAGCTGTTCAATAAAACTTCTCTCTTTGCTTACTGCACATGGTTTCTGATGCAAGCCAAGATCTTTTCTCAACGAATAATATTATCCCTATTGCTATAGCAAAATCAAATGTCATCCCCATCACAGTGTAcagtaattgaaataaatctcCTCCAACCAGACCCTCTGGGCCATGGTTCTTCCTGGTATAtgagaaatgtgtgtatatatgttgtaTAAATATGGTCTGCTCTCCAGGGAGACACAATGAGGGAAAGGTTAATGGATCCCATTGGTTATGTATGAATGGAATATTGTTTCTCCTTGAGGGAATGTAGCAGGGGGGGCCGGTGGTCaatgtaaactgtaattttcttttttttttggtgggaaTAAATTCTATGTTGGAAACTTCAGGATGTGCGACATGGCTAAGCAGCCTAACTGAATTGGCTTTAACTGTTTATTCTCCAGATTGACCCCTCTCACTCTTCTCTGGTTTCATGACCTCATCCAGAAAGATAGATAAAAGACTCGTTTTATATCCAACAATAACCTATTTTCTATGCCAGTCCAAACCTAGACCGGCTTCTCCTTCAGCATCAGTTTCCGATTTGAGCCGTTAGAACAGGACTGTCAACTTTGATGATTGCAGAGCAGCCCATTACATTGCGTTTAACAAGCGGACaggatataaaatgtatacagataTCTTTCTCCTGTGTACTACATGGTGGATACATGCTCATGATGACTTCAACATTCCAGGAAGAAAGTGGTTTCTTCATGAATGTATTTAGTAGGAATGGGACTGGATTATATTCAAGGATTATTTGAGTTTTTGCAATCTGTGAATGCTGTTCCACTGCAAACACATAGGAAGAAAAAGATAAATTGTGGACAATTACCCAATCTATTTGTCTAAATATCATccataaaactatatatactaGACAGTCAGCCTTTATCTTACCTTCCCTTGTTGATGCAATCAGTGAATTATTTGACAATTGTCTACTTCGCTGATTTACAGAGTTGGCGCCATCTGAATAATTGAGTTTAATCATTGTTGTAGTTTAGAAAGCCACAGATTTCTTGTTCCCCTTAAAAACAACTGAACCTACACAgtcttaaaatgcttttttcagGGTAATGTCTTAATTTTCCTCTCATTTTACAGAGCCTctgtacttatatatatatatgagagcgAGAATATGCAAATTTAGGATTAAAGTGTGTAAAGAATAGCCATtccaatacaattaaaagtcaTTTAATTCAATTGGATTTGACTATTTTCTGCTTTAGATATTCATTTCTCACAGATGTACTtgaaacacaaattgaaattttCAGGATGTAAATATCTATTATTTAAGCTTAATTTGTGGTGTTTGAAGCCACACCTCCTCCTGAggtgatgtatatattttttaaattcatatatgCCACGAATATAAAAGATGTTTCCCCCATTGGGGGGAGGGTCTGATCTACAAATCAGACTTCTCTACAACAGGAACATCATAAAATGTACCTCAAGTTCTCTGAAGCTTTAAATGGATCATGAACATCAAAACGCAAAGTTTGGTGAATGCTTGAATTTGAACACACAATTGCAGTTGGTAATATAATGCTTGAGCAGGTGGTTTGAGCCACTGTGTTGGTTGTTTTTGCCCTGTTCTATGCAAACCAAACccttcttatttttcttcttctgctactACTTCTTTCAGCTGCTGATATCTTCTGAATTTGGGAATGGTTTCCctttcattaatcatttttgtttcgctcccattatttatttaactgctgTACATTTGATATTCAATAATTGTCTGTCTTTATAtaaatctatctatatataaatagtctATCCTGATTGAAAAGctcaatgtatataaatgttgtaatttatgtttaatgGAAAAGTATACATTCCAtattaaacacaacatgtttaGAA

Function

GO: NA

KEGG:

id description
K23859 PLEKHG1_2_3; pleckstrin homology domain-containing family G member 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186263 lncRNA downstream 20366 3760302 ~ 3760617 (-) True G148041
TU186232 lncRNA downstream 92752 3687963 ~ 3688231 (-) True G148011
TU186213 lncRNA downstream 138314 3642365 ~ 3642669 (-) True G147997
TU186193 lncRNA downstream 223146 3552159 ~ 3557837 (-) True AMCG00000084
TU186147 lncRNA downstream 317351 3463303 ~ 3463632 (-) True G147941
TU186436 lncRNA upstream 426281 4230642 ~ 4231328 (-) True G148181
TU186460 lncRNA upstream 743463 4547824 ~ 4548060 (-) True G148198
TU186647 lncRNA upstream 1270069 5074430 ~ 5077246 (-) True AMCG00000161
TU186704 lncRNA upstream 1432507 5236868 ~ 5240683 (-) True G148364
TU186748 lncRNA upstream 1536394 5340755 ~ 5342491 (-) False G148395
AMCG00000092 mRNA downstream 45381 3726337 ~ 3735602 (-) True AMCG00000092
AMCG00000091 mRNA downstream 72013 3708383 ~ 3708970 (-) True AMCG00000091
AMCG00000084 mRNA downstream 222082 3554696 ~ 3558901 (-) False AMCG00000084
AMCG00000080 mRNA downstream 381330 3388190 ~ 3399653 (-) True AMCG00000080
AMCG00000076 mRNA downstream 453343 3308930 ~ 3327640 (-) True AMCG00000076
AMCG00000107 mRNA upstream 72003 3876364 ~ 3897220 (-) True AMCG00000107
AMCG00000106 mRNA upstream 116234 3920595 ~ 3928012 (-) True AMCG00000106
AMCG00000115 mRNA upstream 173355 3977716 ~ 3979326 (-) True AMCG00000115
AMCG00000118 mRNA upstream 208878 4013239 ~ 4037286 (-) True AMCG00000118
AMCG00000119 mRNA upstream 258592 4062953 ~ 4100974 (-) True AMCG00000119
TU185384 other downstream 3295400 484720 ~ 485583 (-) True G147324
TU185352 other downstream 3388501 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 3388848 387118 ~ 392135 (-) False AMCG00000037
TU186746 other upstream 1534448 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 2256961 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 2346359 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 2404913 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 2411395 6215756 ~ 6216441 (-) False AMCG00000190

Expression Profile