RNA id: AMCG00000106


Basic Information

Item Value
RNA id AMCG00000106
length 3919
RNA type mRNA
GC content 0.42
exon number 12
gene id AMCG00000106
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3920595 ~ 3928012 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGATTGTAAGCATAACTGAACAACATCtccattgtgatttatttttagtgaaAGCGGATTTAAATAACATTGACAATTCTGTCTGATTTAAGTTGGGCATGACAAAATACAATGCTCATAATAATCATGTCGTGTGCGCATTAGTCAGTAAACTACGAAGAGCTCTCCCCTTATTAATCCGACATGGATGGCAGATGTTACGGCTGTGCGTCTAAATTCACCCGCTTCAAAAAGGagctCGGATGTAAGAACTGTGGCAAGTCCCATTGCTCGGGCTGTCTGAACTACACTGCACTGGTGCCCCGCTGCGGTAACACCCAGCAGAAGGTCTGCAAGCAGTGCCACGCCAATCTCACTAGcCCAGAAGGAGCCCAGAATAATGCTGCTAAATGGTCTCCCCCAGAGAACTACAAAAAGAGGGTGGCAGCTCTGGAGGCCCGGCAGAGCCAGCAAGGTTTGGCATCTGGGCCCAGTACAAAGAGCAGTGCCCCAGGACATACTGTGGCCAAAGGACTGAGCAGAGAGGACCAGGCCATTGCAGAGAGGCTGCAGAGACTGAAGGAGGACACTAAACCCAAATCAATCCCCTCTGAGAAAGAGATAGAGGCCCGGCTGGCAGCTCTGAAGGCCCCTACCCAAACCATCCCCTCTGCCTCGGAGATGGAAGACCGCCTGGCTGCCCTACAGGGACACACCCCACCCTCCCAGGCCTCCAGACCGGTCCACCAGCCCCCTGATCACAGAACCCAGACTGAAAAAGCCAACGATCTGATTAGCCAGCTGTCTGAGGAGGTAGCCATCGACAACAGATACGAACCAGACTCAACCTCGCAAGGCGTAACAGGCACGGACGGCCCTCTAAACAACCTGAACAAGGAGGAGGGTGGGGCGTTGGACGAGAATCTGGATGATCTACAACGGGACGCCAAGCAACTGGAGGCCGAGAAGAGCCGTCTGCTGACAGAAGCCAtggaggagctgaagaaggAAAAAGTGGGGCAGGGGCAGGTGCTGCAGATGGCCAAGAGGCTGGCACTCCTCAAGGGACAGGACCCGGACAAAATCACTGCACAGGATCTAAACCAGTCGGACAGTGAGGAGGAAACGGAGGAAGAGGCAGTGAAAAGGATGTTGAAAAAGCTGTCTGAAGAAGCCGCTTTAGATGAAGCCAGTGGCTACAACATCCCACCTGAACAGAGCGGTCCAATAAATACAGAGAAGCCAGGAGGTTATAAGAAGGTGCCCAGTGCGGTGCCGTCCACAGTGGGTAGAAAGCCCGCTGCCGGGGCCCTGGCCTCGGACTCTGATGAAGAAGAGCTGCCCTGGTGCTCTCTCTGTAACGAAGACGCCACTATACGCTGCCACTCTTGTGATGGGGACCTCTACTGTAAAAGATGCTTCAGGGAAGGTCACGACGAGTTCGATAGAAAAGAACATCAGACAGACCCTTACCAAGCACCGCAGAAAACGAAAAAGAAGAAGTGAAATGCTGATGTACGGAGTTCCTGTCGGAGACAGTAGCAGCCTTTGGCAAAGACACGAGAGAAAACCCTTGACgtgctttgtttgatttagTGCTTTATCATCAGGAATTGATTGGAACTGCACAATAGTTATCTTTGTCTAGCAGAGGAGCAGATCTTATGAAGGCACTTAGTCTTTTATATCAGTAgactcaaataaaataatctctttATTACAGCTTCAAGATCACCCTAGTCACAATCCGTGTTTATACTCCACTGGAAACATTTCAATAAGAGAATAAGCAGAGTTTACTGAGATTGTGACTAGTAACGCAAATAAGTAGTAACTGACACAAACATAATTGATGTAGGGATTGAGTGCATGTGCAGGATTTACTAGAATTTATCCAAGAAATCTAGATTTCTAATTTCTTCAAACAACAATAACTTAATAAGAAAATCTCCTGGGTGTGACCATTTTCATTGTATGAGGAGAGAATGAGGCATCTGATATATTCTTTATCTATTCATAATAACTAGCGGTGTTCAGATTAGtcaaaattgtattatgaatgtttttatttggtgattttatgtttaaatcaCATACAGGTACTATTAATGGGGTCTCGGCAGACAATTACATACTGTCAGTGTTGCACTCTTAACTGGAAACTTGAAGATTCAGCTGTGAGCAACTTTAAGTTATTAATTCCTACATTTAGTTACTTCTGGTTATAGAAATAGCaatatctttttaaatatagcttCTGACGTGGGCCTATGCCCACGGACGTCTAGCACACTCAAGACTATAAGGCATTACTGTTAGCTTAATTAGACCCTGAGTGCTTGTGAACACCAGTCTCTCCAATTAATCTCACAAGTGACTAATCAAGGTCTTAGTTGCTCCAAAATGACTCATGCTTTTAGCTCTGTGGTCTCTGAACTCACAGCTGGATACGTTAGAAACccgtatatatagatataatgcATAATCTCCCTTTCAGTCCTCTGTtgccataaataaaaataaggaaaacattCTTGAGGAAAAGTACCGTTCTACCTTACATGTTACATTAAGATGTTCCCAACCATGCAAAGggatttttagttttctgtccTCTTGAGCTGCATTTGAAGAGCCATTTGTAACCAACAGTGATCTTTGTATGTTGTCCTATAGCAGAGGTACATTGGCTAAAGGTCAAAATATAAGGCTGTGCAGGATGGgttttcttttcagaccacTTGGGCAGTCACTGATGTGCCAGATGTCTTATATATAggtatacacatttttatatttttattattattattattattattattattatatttattatttctaatgtgAAGAACTGTACTTTAAAGATTCTGTAaattcagtttctgtttttatgtccTGTTATTGGTCCATTTTGAAGAAGAGTATAAGGACAGGAAACAGTCCATTTACGATTTAAGTGCTTtatccaccccccacccccaacacttCAGAAGTCAGTTAGAGGACAAAGTCCACTGATAGGCAAATGTATATCATTTCTGAACCGAAAGTTCTCAACACTCCTTAATGGCACTTTAAGAACCTTTTCATGGCCTCTGTATAATCCACACAGACATGGGCAAGTTAGTCATGTTGGATAATATactatgcacacacacacttcagttcAGTGTCTTACGACGTTATATGTGTATTTCATAATATACCTAATTGGTGAAAATGATTCAATTACAGGTTTAATTCTGGAATGTTTACATTTCCGTTGGTACGCTGTTTGGTTTCCTCCTGTGACAAATATTTGGAGCATCCCTCCCTCTGTCTATCTTTGTTAGCTAATTAAACTTGGCCTGGTGTATTAAATTGCCTAGTTCTACATAATCCCAGGATATTACATGTTTTCTGCACACTTCTTTTGATACTGTATAATCTAGATTGTATTGTAAGggagaaatacaataatttgtaaatatattgaaaggaaaatgcaaacaaagtaaATTTCCCTTAGctctgtattgttattattattttcatctgaAAGTATTTTTAGCTGTGCAAACATGCAAGTTctttttacagctgttttaaggggaggaaacaaaaataagtccGTAATTGTATTTGCTGTTACAGGGTTGGCATAGAAACACCTCACATTTCAGTCAGATCTAGATGTTATACAGCACAGATCTAAAACTGCACTACATTGTGGATATAGCTAATAAGAAAGaccattgttttcattttgtgaatcAGGTGCGGGTAACTCCTTTCGGTCTTTCTGTGCATCTCATTTGTTgttcaaaatgatttaataaaattcattattaaagaaaattatattaatccTTGCCTCCACACAATTTAATGAACCTCAAAGTAGGAGAACTTTCATTGTTTGGATTAAATACTCTTGTAAAGTAGTTAATTTCTGAT

Function

GO: NA

KEGG:

id description
K24778 ZFYVE19, ANCHR; abscission/NoCut checkpoint regulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186263 lncRNA downstream 159978 3760302 ~ 3760617 (-) True G148041
TU186232 lncRNA downstream 232364 3687963 ~ 3688231 (-) True G148011
TU186213 lncRNA downstream 277926 3642365 ~ 3642669 (-) True G147997
TU186193 lncRNA downstream 362758 3552159 ~ 3557837 (-) True AMCG00000084
TU186147 lncRNA downstream 456963 3463303 ~ 3463632 (-) True G147941
TU186436 lncRNA upstream 302630 4230642 ~ 4231328 (-) True G148181
TU186460 lncRNA upstream 619812 4547824 ~ 4548060 (-) True G148198
TU186647 lncRNA upstream 1146418 5074430 ~ 5077246 (-) True AMCG00000161
TU186704 lncRNA upstream 1308856 5236868 ~ 5240683 (-) True G148364
TU186748 lncRNA upstream 1412743 5340755 ~ 5342491 (-) False G148395
AMCG00000107 mRNA downstream 23375 3876364 ~ 3897220 (-) True AMCG00000107
AMCG00000105 mRNA downstream 116234 3780983 ~ 3804361 (-) True AMCG00000105
AMCG00000092 mRNA downstream 184993 3726337 ~ 3735602 (-) True AMCG00000092
AMCG00000091 mRNA downstream 211625 3708383 ~ 3708970 (-) True AMCG00000091
AMCG00000084 mRNA downstream 361694 3554696 ~ 3558901 (-) False AMCG00000084
AMCG00000115 mRNA upstream 49704 3977716 ~ 3979326 (-) True AMCG00000115
AMCG00000118 mRNA upstream 85227 4013239 ~ 4037286 (-) True AMCG00000118
AMCG00000119 mRNA upstream 134941 4062953 ~ 4100974 (-) True AMCG00000119
AMCG00000116 mRNA upstream 195143 4123155 ~ 4130843 (-) True AMCG00000116
AMCG00000117 mRNA upstream 231896 4159908 ~ 4179114 (-) True AMCG00000117
TU185384 other downstream 3435012 484720 ~ 485583 (-) True G147324
TU185352 other downstream 3528113 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 3528460 387118 ~ 392135 (-) False AMCG00000037
TU186746 other upstream 1410797 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 2133310 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 2222708 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 2281262 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 2287744 6215756 ~ 6216441 (-) False AMCG00000190

Expression Profile