RNA id: AMCG00000107


Basic Information

Item Value
RNA id AMCG00000107
length 4778
RNA type mRNA
GC content 0.42
exon number 10
gene id AMCG00000107
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3876364 ~ 3897220 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCGCTCGGTGTCGCGTTTCACTTCCGGGTCTGCGCAGAGGTAGCGACACACCTGAGCCGCACAACACGGGGCTTTAATTGTTCGTCGCGTCGCATCGAGAGGAAACACCCGAGCCACCTCTCAATGCGTCACTCTCGACAGAAACTAGACAgggttgttgttggtttgtttgggtttttttttttttttttggaagaaagAAACTAGTAGATAAAAAGTGATTTGTGAAAGGACACCCGGCTTACATGGACTGAGTTGCACTGCGTTTGAGAAGGCGATTGGACAGGATCAGTTCCACAACAAGattCTAGAGAAACACATTGGATCCAGGTCGTTTTACTGCCTTAAAATGACCCCGTTCCGTGTCGGATTATTCTGCTGGTCTTGGCTGCTTTTCCAAGGCGAAGTGGGGGCTCAGTCGGTTGGCGGTGAATGCTTTGCCAAATTCACCAGCGGCCAGTCAGACTTCGTCCTGGACACCGACGACTCGGTGAAGCAGGGGGCCACGTACCTGTCCTCGCCGGAGGTGAGACGAGCCAAGGACTGCGTCTGGGCCTGCTGCAAAGAGCCGAGGTGCAACCTGGCGCTGATCGAGAAGGATGGCGAGGACGAGCTGGTCAAGCACTGCTTCTTGTTCGACTGTGTGTACAAGCAAGCCTACGCCTGCAAGTTCGCCAGGAAGGAGGGATTCACCAATTTCATGCTGGAGTCGGTCTCCAAGACTTTCATGGACGTGCGCCGCGCCGGTGACGgTGATGAAGATAAACCTCCAATTGCCAATGCTGGTCACGCCAGAGTTGTCCAGCCACATGAAGTGGTCATGCTTGAAGGCAATCAGAGTGAAGATGACCACAAGATTGTCAGCTATGTTTGGTCCCTGGTTTCAGGAAACCCCTCATTCACATTAGAGAAAACTCACCTGGATGATCAAGTCCAGGTGTCTGAGCTCATACCTGGGAAGTATGTCTTTCAGCTGACCGTTACAGACTCTGCCGGACAATCTGATTCTGCCCAGGTCACTATTCTTGTCCTCACGCAAGAGCAATCAGAGAGTCACTGTCTGGTTCCAATGAAGATCGGCCCTTGCCGGGGTTCGTTCGCTCGCTGGCACTACAATGCGGCCTCTGGAAGTTGTGAGAGCTTCCTATTTGGAGGTTGCAGGGAAAACCGGAACAATTACTTGACGCAGGATGAGTGTAAAAAGGCTTGTGAAGGAGTGACAGACTGCAACACTCCCTGCCAAGACACCCAGTTTACCTGTGACAACAGGTGCTGTATTGACAAAGGGCTCGAGTGCGACCAGAAGAAGCAGTGCGAAGATGGGTCGGATGAAGCCTCCTGTAAATCCATCGATGAAACTTTTACCCGTCTGTTGAACATTCAAATTGAGAAGAACAAAGATCCGCCAGCTACTGGACCCTGCCGCGCCAGTATGACCATGTGGTACTATGACCCTGTGAACGAGAGGTGCCATCGCTTCAACTATGGGGGCTGCGATGGCACTGAGAACAGGTTTCCAACAGAGGACATTTGCATGGAGGCCTGCAAAGGAGTAACTGGAAAGGATATGTTCTCAAGGAAGTTTGCTGAGCGTCAGGAGTCTGACAAGTCCGAATCAGGCACCATTGCAATAGCTGTTCTTCTAGGTGTTGCCATTGCAATTGTCCTGGCCATTCTGGGCTATTGCTTCCTGAAAAACAAGAAGGAGCGCAACAGACAACCACAGCGTGTAGTGGTCAACGGCTCCACCATCTCCACCACAGGAGACACCGAGCGCCTCGTCTACAACTCCACCACCAAGCCCATCTGAGGAgcacacaaacagactttttCACTTCCCATTCAGGCAGGATCTCCCAATTTGTGGAGTGAGTCTGCTTTTCTTTTGGTCTGCCTTGGTCTTACTGCTTTTTCCCCAGTAAGACCAAGTCATTTTCTCCCGTTCGATGTTCTTGACAATTTGTCAGCGCAAGCCTCTGTGATGATGCATGTGAGTTTACATGGAAAGTTTGCATCTGGCAGTATTGCCCCACTTAGATCTAGCAGATTAACCTGGAAAAATAATTTGGTCTGTACATTTAAACTATGATTTTTGTTAGGTTTTTGGCATTTAATCCAGGAAAGCCAATTGATCTCAGGTTGACACCGCTTCATTGAAACTCGGCCAAACGtgggggttttgttttttgtttttgcttttgtacgTAAATGCCTTAGATGTCTTGGTGACTACAGATTTTTAACTCAAATGATGCGTAGGTGTATATAGATTTCATTTAAACCAGTTCAGTCACAATGAGTTGTCGTCCACTTCtttctcagtttgttttgttcttatatCCATTTATACAAGATCCCGTAGAACATGTTGTATATCATATCTGTTGGGATccttgttgctgctgttttaccTACATACACAGAAACCTTTGATTGAAATGACTGCCAGTTAGCTTTATGAATTACTACCGTTtctttttaagtgttatttaaCACTCCAAAGAGGCTTctaaggttgttgtttttttgtatttgtaaaatgtgccttgctgaaaaaataatgtatataattttctaTGTGTAGGGGTGCTACAGAGttagttgattttatttttaacacgtAGAGTTgtcataaaatagttttttggtCATGCATGTGTCGGTaagaaaatcttattctccAAGAAAATCATTCCAGCTAACAAGTTATGTCAAAAGTCTTACCAGCACATGGGTGGTAGGTACATATATGGAGTCTTTTGtcatctttaatatttttgtaatgtgacCCTCACAAATCTCATAAAAATACACGATTATGCAAAATACCCAGCAGGTGCCCATGCTCCTAAATACTCCAAACAATTGTACACCTAcgcatatgcacacacacataccagattttgaaaaactaaatctgttGATGTAGGTGATTCCCAGAGGGTTGGGGCTTGGTGTGATAAACACTTGCAGTGCTACTCAATAAGAAAAGTTTACATTTTGCTAGTGTAACTAGTAAAGATTGTAAAGAATGGTGAATACTATTGGTCGTATACTTTATTGTTATGCATATGTTGGTTGGAATATTTTCACCAGTCCACCATAAAAGGGTACTTGTTTTATCCACAcccacaccccaccccctctttaGGAAATAATGGGACTTTGAATCGATGGCAGTGCAGCAGCTATAATTTTCtccttcaaagaaaataaaccaatgtATAGCTCCATCATGGAAGAAATGTAGaataattggttaattgagAGCTGCTTGCTTCACTCAGATTGCACTGCTTTCATCCCTGTCTTCAAACTCCTTCACCAGTTTTTAagagggtgtggggggggggggggtctgacTTATCCTCTTATCACCTGTCTTTcagcaaaatgttttccatatgAACTCCTTACTCCCCATACTGTTAAGGTTCCCTTGTCTACTATTTTTTCCAGCAGAAATGTgggattgtttttaataataataaaacctttttttttattattcctgtCATTTCTTACTACTTGTGTATAAATTGTTTAAtctacatgtatattttaaacaaatctttaCTATTGAAATGAAACGGTCatagttttgtaaataattgtaatctGGTTTTGCAAAAATGCTTATAATAAATCCAAGTAAGGGGAATTGTAGAAAtggagggatttttttttaatacacagaaCATATTGTACATATGAATACATCTTCTAGGTTAAGAGAGAATACTATGTTAACTTCTGGTCATTGAATGAAGATTCCCACAGGTTAGCCCAGTTTCACATTTGGTGTTGATGTAAATTTGGTGCAATGAACAGAAGGTGTGTGATTCCAGCACAGGGTGATAAGAGTTTAAAGTGATAATTCAGATGGCTGTTTTGATTCCCTGCCAGCAGTTTGTTTGGTGGGATGCTGTATTAATTCATACAAGATCATAAGAAGCTGATGTTTGCAGCATCTACACCAACTGAATTCCCTTTTATTGTAAAATCAGGTGGGGTAAAGTGAGTGAGCAGACATGAAATTTAAAATCTAGAAGTACAACACTAATATAGTTTGTATATGTTTAACAGAGGTACAGCACAGAACAGCAGGCACACATtcatgctttttattgtttccctttCTGTGTCTTGAGACATGGGTAACATTACTTGCCCTATTGGTCCCCTTCTCTTGGCTTGATTTCTGGCTACACAGAAtggaatgaaataaatacatcctgGAACTtctaatgcatttcaaatgatctcccttttggttttgtattttcccCTGTGCATTAAGTAATTTCTTATGTTTGGCTTTTGATTTTTCTGATTTATAAAACTAATacttttgttaaatgtaatctACCTGATGTATTTTACTAAATTTGTAGATTTGTTATATGGATGAATAATAGCCTAGATGGTATATTCCTGTGAGTGGGGGGTTTTAAGGTTTTTATAGTTAGGCATACAAATGATCAAATTTGACAGATATTGTTGATATTTTCACATGCAAATGGGTGTCCATTACCAGTATCTGTACACCAGTTATTACTCCTGGTCTTTGCAACTAGCTAGTTTTGTAATTCATGGACTTTATTGGCTTTATTCCCATACCCATACGTTAGTCTCATAcccccaaaaacacacacacacacacacacacctgtctgtATCTGCTGCATCTGAGTGTAAAGAATGTCCTGGGTTAAGTCAATGTGTTTTCTAATTAAAGAAAGAGGGGAAACATATTATTGACtactgtctttattt

Function

GO: NA

KEGG:

id description
K15619 SPINT1; Kunitz-type protease inhibitor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186263 lncRNA downstream 115747 3760302 ~ 3760617 (-) True G148041
TU186232 lncRNA downstream 188133 3687963 ~ 3688231 (-) True G148011
TU186213 lncRNA downstream 233695 3642365 ~ 3642669 (-) True G147997
TU186193 lncRNA downstream 318527 3552159 ~ 3557837 (-) True AMCG00000084
TU186147 lncRNA downstream 412732 3463303 ~ 3463632 (-) True G147941
TU186436 lncRNA upstream 333422 4230642 ~ 4231328 (-) True G148181
TU186460 lncRNA upstream 650604 4547824 ~ 4548060 (-) True G148198
TU186647 lncRNA upstream 1177210 5074430 ~ 5077246 (-) True AMCG00000161
TU186704 lncRNA upstream 1339648 5236868 ~ 5240683 (-) True G148364
TU186748 lncRNA upstream 1443535 5340755 ~ 5342491 (-) False G148395
AMCG00000105 mRNA downstream 72003 3780983 ~ 3804361 (-) True AMCG00000105
AMCG00000092 mRNA downstream 140762 3726337 ~ 3735602 (-) True AMCG00000092
AMCG00000091 mRNA downstream 167394 3708383 ~ 3708970 (-) True AMCG00000091
AMCG00000084 mRNA downstream 317463 3554696 ~ 3558901 (-) False AMCG00000084
AMCG00000080 mRNA downstream 476711 3388190 ~ 3399653 (-) True AMCG00000080
AMCG00000106 mRNA upstream 23375 3920595 ~ 3928012 (-) True AMCG00000106
AMCG00000115 mRNA upstream 80496 3977716 ~ 3979326 (-) True AMCG00000115
AMCG00000118 mRNA upstream 116019 4013239 ~ 4037286 (-) True AMCG00000118
AMCG00000119 mRNA upstream 165733 4062953 ~ 4100974 (-) True AMCG00000119
AMCG00000116 mRNA upstream 225935 4123155 ~ 4130843 (-) True AMCG00000116
TU185384 other downstream 3390781 484720 ~ 485583 (-) True G147324
TU185352 other downstream 3483882 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 3484229 387118 ~ 392135 (-) False AMCG00000037
TU186746 other upstream 1441589 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 2164102 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 2253500 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 2312054 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 2318536 6215756 ~ 6216441 (-) False AMCG00000190

Expression Profile