RNA id: AMCG00000113



Basic Information


Item Value
RNA id AMCG00000113
length 458
RNA type mRNA
GC content 0.47
exon number 5
gene id AMCG00000113
representative False

Chromosome Information


Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 4112120 ~ 4193033 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTTTCAAATTCCACAAGGCTCTATAAATACGGTATGGAAACCTGATTTGAATTTAAACCTATCTAGCTTCAGCACAAGTTTGAATTTTCTATCAGAACCTATCGAAGAGAGCTCAGAATGAGTGCAGGCAACAGATTCCTCCGACAGGCGATGCAGCCCATCAGGCTGGTGGAGATTGTAAAGGAAAGGGCAAAGGAAAAGGAGAGCATGGTCACGGTCATGGTCACGGTCATGGTCACGGAGAACACGGAGGTCATGGAGATCACGGATGTGGAAAACCTGGAGGAAAAGGAGGGGATTGCGCTAAAAAGGGAGGCCAAGGTGGTGGCCAAGGTGGTGGCCACTGACACATGACCCAGATGTGAAACCACTTCATCACCTCCCAACGTGGGCTTTGTAGCTATATATTCAGCTGGAAGATGTGCAAATATTACTGTCAAAAGTTTGTAAAAAGTGGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU186359 lncRNA upstream 103536 4011654 ~ 4013403 (+) True G148119
TU186304 lncRNA upstream 237418 3876371 ~ 3879521 (+) True G148075
TU186258 lncRNA upstream 357936 3728325 ~ 3759003 (+) True G148036
TU186231 lncRNA upstream 428708 3687963 ~ 3688231 (+) True G148010
TU186210 lncRNA upstream 485484 3630582 ~ 3631455 (+) True G147994
TU186388 lncRNA downstream 40875 4160855 ~ 4162311 (+) True G148143
TU186391 lncRNA downstream 53457 4173437 ~ 4175716 (+) True G148146
TU186462 lncRNA downstream 462331 4582311 ~ 4582551 (+) True G148200
TU186651 lncRNA downstream 968459 5088439 ~ 5161195 (+) False AMCG00000136
TU186654 lncRNA downstream 1012629 5132609 ~ 5159533 (+) False AMCG00000136
AMCG00000108 mRNA upstream 45505 4044112 ~ 4071434 (+) True AMCG00000108
AMCG00000109 mRNA upstream 107651 3998178 ~ 4009288 (+) True AMCG00000109
AMCG00000103 mRNA upstream 140516 3957641 ~ 3976423 (+) True AMCG00000103
AMCG00000104 mRNA upstream 176146 3928472 ~ 3940793 (+) True AMCG00000104
AMCG00000102 mRNA upstream 200986 3906422 ~ 3915953 (+) True AMCG00000102
AMCG00000114 mRNA downstream 11649 4131629 ~ 4135410 (+) True AMCG00000114
AMCG00000112 mRNA downstream 71854 4191834 ~ 4225082 (+) True AMCG00000112
AMCG00000111 mRNA downstream 123668 4243648 ~ 4280265 (+) True AMCG00000111
AMCG00000110 mRNA downstream 204529 4324509 ~ 4354247 (+) True AMCG00000110
AMCG00000121 mRNA downstream 565609 4685589 ~ 4705926 (+) True AMCG00000121
TU186262 other upstream 356315 3760179 ~ 3760624 (+) True G148040
TU186257 other upstream 392623 3720985 ~ 3724316 (+) True AMCG00000093
TU186234 other upstream 421137 3693109 ~ 3695802 (+) False AMCG00000094
TU185878 other upstream 1712967 2403730 ~ 2403972 (+) True G147726
TU185496 other upstream 2999989 1063085 ~ 1116950 (+) True G147416
TU186772 other downstream 1315178 5435158 ~ 5435762 (+) False AMCG00000142
TU186901 other downstream 1761043 5881023 ~ 5888027 (+) True AMCG00000166
TU187068 other downstream 2351451 6471431 ~ 6474232 (+) True AMCG00000201
TU187079 other downstream 2396527 6516507 ~ 6520822 (+) False AMCG00000198
TU187266 other downstream 3170686 7290666 ~ 7296664 (+) False AMCG00000216

Expression Profile