RNA id: TU186373



Basic Information


Item Value
RNA id TU186373
length 433
lncRNA type read_through
GC content 0.49
exon number 7
gene id AMCG00000113
representative False

Chromosome Information


Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 4112120 ~ 4193033 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATACAGGAATGGACAAGATTGAACAAGGTGGGGTCACCAAAGCACAAGTTTGAATTTTCTATCAGAACCTATCGAAGAGAGCTCAGAATGAGTGCAGACAAGCCAACGATTCCTCCGACAGGCGATGCAGCCCATCAGGCTGGTGGAGATTGTAAAGGAAAGGGCAAAGGAAAAGGAGAGCATGGTCACGGTCATGGTCACGGTCATGGTCACGGAGAACACGGAGGTCATGGAGATCACGGATGTGGAAAACCTGGAGGAAAAGGAGGGGATTGCGCTAAAAAGGGAGGCCAAGGTGGTGGCCAAGGTGGTGGCCACTGACACATGACCCAGATGTGAAACCACTTCATCACCTCCCAACGTGGGCTTTGTAGCTATATATTCAGCTGGAAGATGTGCAAATATTACTGTCAAAAGTTTTTAAAAAGCGGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU186359 lncRNA upstream 98717 4011654 ~ 4013403 (+) True G148119
TU186304 lncRNA upstream 232599 3876371 ~ 3879521 (+) True G148075
TU186258 lncRNA upstream 353117 3728325 ~ 3759003 (+) True G148036
TU186231 lncRNA upstream 423889 3687963 ~ 3688231 (+) True G148010
TU186210 lncRNA upstream 480665 3630582 ~ 3631455 (+) True G147994
TU186462 lncRNA downstream 389278 4582311 ~ 4582551 (+) True G148200
TU186651 lncRNA downstream 895406 5088439 ~ 5161195 (+) False AMCG00000136
TU186654 lncRNA downstream 939576 5132609 ~ 5159533 (+) False AMCG00000136
TU186722 lncRNA downstream 1119845 5312878 ~ 5314953 (+) False AMCG00000145
TU186736 lncRNA downstream 1146713 5339746 ~ 5340548 (+) False AMCG00000146
AMCG00000108 mRNA upstream 40686 4044112 ~ 4071434 (+) True AMCG00000108
AMCG00000109 mRNA upstream 102832 3998178 ~ 4009288 (+) True AMCG00000109
AMCG00000103 mRNA upstream 135697 3957641 ~ 3976423 (+) True AMCG00000103
AMCG00000104 mRNA upstream 171327 3928472 ~ 3940793 (+) True AMCG00000104
AMCG00000102 mRNA upstream 196167 3906422 ~ 3915953 (+) True AMCG00000102
AMCG00000111 mRNA downstream 50615 4243648 ~ 4280265 (+) True AMCG00000111
AMCG00000110 mRNA downstream 131476 4324509 ~ 4354247 (+) True AMCG00000110
AMCG00000121 mRNA downstream 492556 4685589 ~ 4705926 (+) True AMCG00000121
AMCG00000120 mRNA downstream 563951 4756984 ~ 4760814 (+) True AMCG00000120
AMCG00000128 mRNA downstream 603336 4796369 ~ 4803426 (+) True AMCG00000128
TU186262 other upstream 351496 3760179 ~ 3760624 (+) True G148040
TU186257 other upstream 387804 3720985 ~ 3724316 (+) True AMCG00000093
TU186234 other upstream 416318 3693109 ~ 3695802 (+) False AMCG00000094
TU185878 other upstream 1708148 2403730 ~ 2403972 (+) True G147726
TU185496 other upstream 2995170 1063085 ~ 1116950 (+) True G147416
TU186772 other downstream 1242125 5435158 ~ 5435762 (+) False AMCG00000142
TU186901 other downstream 1687990 5881023 ~ 5888027 (+) True AMCG00000166
TU187068 other downstream 2278398 6471431 ~ 6474232 (+) True AMCG00000201
TU187079 other downstream 2323474 6516507 ~ 6520822 (+) False AMCG00000198
TU187266 other downstream 3097633 7290666 ~ 7296664 (+) False AMCG00000216

Expression Profile