RNA id: AMCG00000115


Basic Information

Item Value
RNA id AMCG00000115
length 1611
RNA type mRNA
GC content 0.55
exon number 1
gene id AMCG00000115
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3977716 ~ 3979326 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTAGACCTAAAGACCTCTGCCAAGGCTCGGGCACCAAGACTTTCCTGGATGCCATGCACAGTGGCAAGGTGCACTTGGCACGGTTTGTCCTTGATGCCTTGGACGGGAGGATCATCAACTCCAAGACGGAGAACAGCAAGACTCCTCTGATGTTTGCAGTTTCTCTCCCAGACGCAGCAGCCCGAGTGAAGTTCACCAGGTTGCTACTGGAGAAGGGAGCTGATGTGAACTGCCAGGATGATCGTGGGAGGACAGCCCTGAGTATGACTTGTGAGCTAGGCTACCTGGACGTGGTGAAGCTCCTGGTGCAGTTCAATGCGGACCCTGAAATCCCCGATGCCTGGGGAAACAACTCCCTTATGTACGCTGCCTGCTCGGGCCACAGCCAAGTCTTGGAGTTTCTCATCAGGGCTTTCAAGAGACTGGGACTCAAACTGGACAGGACCAACCAAGCTGGGCACTCGGCTGCCCAAGTGGCCAATTTCTTCGGGCACAACCAGTGTGTCCAGGCACTCAACAGCCAAGGGAAGAAGGCACTCGATACAGAGGAGCAGCTCGTGGAGGTGAGCAGCAAAGAACATGCAGATATTCGGCGCCCAAACCGTCTACCAAAGCAAGTGCTAGAAAGGTTCACCAAACAGTTCCACAGTAAGTGTGAAGACCACCTGCCGGCTGTGTTTCAAAAGCAGCTCAAAGTGGGAGACAGCAATGGGGTGAGGAAGCGAACCAAAGTGCAAAACCAGTCGCCGGACCGAAAAGGCCCCAATCCACCTTTCTTGAATCACTTCAACAAACATTTCGCCACCAAAGACGACCAGGAAGACCAAAGCAGCACCCTTTTCACGGCCAAGCAGATGCAAAACTGCAAACTGAAAGACCTGAGGTGCAGCCAAAGCCAAACGCTAGAATTCAACACCAAGGAAGATGAATCTATAGACAGAGCGGTGACACAACAAGTGCTGCAACCAGTTCCAGTCTGGGGCAGAGCAAAGTCCTTGAACAGCGAGCAGATGCTTTTCCGAAACCAGACAGAGCAAAGTGCCTTGCCTGACACACTGAGAGTGAAGAGAGGATCGGTGCAGGATGAGCAGTCTGCACACATGCAATACCAAGAAGATGCCTGTCCTGCTGCGATCAATGACCTTGACGCAAGTGGCTGCAGCGCGTCTAGGACACGGCTAGACCACCTCAGACAGGGGCACTGCTTTGAGCAATCAGACGGCGCACAGACACCGAACCCAAAGCACAGCAGCCACGCAAGCGGCAGCCCTGCGTACTCGGAGAAAAGGCTGAGCCTCCCTCAGTGCGGCCGGCCGGACAAGCTCCTGGCGCAGAGAGAGGAGCTCCCGCCGCACAAGATCCAGGCAAGTCCGCCGGCCATCTCTGCGCTGGGGACCCGCTTACTGCGCCGCTTCACAGCCCCGGAGTTTCTGAGACTAGTCAAAGACTTCCCCTCGGGCTCAGACCACGGGAGAGCCAAGATATCCCGATCGGAGACTTTCCCTCTTTCATACGCGCACCACAGAGTCAACCACCAGCCAAGCGTGGACAGCATCAGTGGGGTGAAGTGCGAGTTTGAAAATAATGCCCACGTTTAtcatgtgtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186263 lncRNA downstream 217099 3760302 ~ 3760617 (-) True G148041
TU186232 lncRNA downstream 289485 3687963 ~ 3688231 (-) True G148011
TU186213 lncRNA downstream 335047 3642365 ~ 3642669 (-) True G147997
TU186193 lncRNA downstream 419879 3552159 ~ 3557837 (-) True AMCG00000084
TU186147 lncRNA downstream 514084 3463303 ~ 3463632 (-) True G147941
TU186436 lncRNA upstream 251316 4230642 ~ 4231328 (-) True G148181
TU186460 lncRNA upstream 568498 4547824 ~ 4548060 (-) True G148198
TU186647 lncRNA upstream 1095104 5074430 ~ 5077246 (-) True AMCG00000161
TU186704 lncRNA upstream 1257542 5236868 ~ 5240683 (-) True G148364
TU186748 lncRNA upstream 1361429 5340755 ~ 5342491 (-) False G148395
AMCG00000106 mRNA downstream 49704 3920595 ~ 3928012 (-) True AMCG00000106
AMCG00000107 mRNA downstream 80496 3876364 ~ 3897220 (-) True AMCG00000107
AMCG00000105 mRNA downstream 173355 3780983 ~ 3804361 (-) True AMCG00000105
AMCG00000092 mRNA downstream 242114 3726337 ~ 3735602 (-) True AMCG00000092
AMCG00000091 mRNA downstream 268746 3708383 ~ 3708970 (-) True AMCG00000091
AMCG00000118 mRNA upstream 33913 4013239 ~ 4037286 (-) True AMCG00000118
AMCG00000119 mRNA upstream 83627 4062953 ~ 4100974 (-) True AMCG00000119
AMCG00000116 mRNA upstream 143829 4123155 ~ 4130843 (-) True AMCG00000116
AMCG00000117 mRNA upstream 180582 4159908 ~ 4179114 (-) True AMCG00000117
AMCG00000122 mRNA upstream 730540 4709866 ~ 4714039 (-) True AMCG00000122
TU185384 other downstream 3492133 484720 ~ 485583 (-) True G147324
TU185352 other downstream 3585234 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 3585581 387118 ~ 392135 (-) False AMCG00000037
TU186746 other upstream 1359483 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 2081996 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 2171394 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 2229948 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 2236430 6215756 ~ 6216441 (-) False AMCG00000190

Expression Profile