RNA id: AMCG00000118


Basic Information

Item Value
RNA id AMCG00000118
length 3441
RNA type mRNA
GC content 0.48
exon number 28
gene id AMCG00000118
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 4013239 ~ 4037286 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGAAAGGCTCTCCATTGGAACCACCAGTAGTAAAGGACTACTTGGTAAAAGGAGACAGATTCACCAAGTGGAGTGAAGAAATGGAGTTTCTGGATATTGCCACGATCCGGGATACAAGATCAGGAAAATATGCTAGAATCCCAAAGAACCAGAAAGTTCGGAACGTCTTCAACTTGGATTTTCCAGACAGTCACTATTTAGCAAAAACACTGACAATAGTCACAGGACTCGACACAGTGAATCTCACATATAACAACTTTTTTGcttacaaagaaaatgtgaccCAGAATTGGGCAGCAGATATTCTTGCTATTGTGTACAACCCCATGAGGATCAATGCTTGCAGACAAGTCTTCCTGGAGAAAATATATGTCCGTATCTCACTACAGAAGAACAAAGATGGCAAGATACCAGTGAAAACgatTTATAAGATGTTCCCTGCTGACAAAAAGAGGGTCGAGGCTGCTTTAGCGTCCGCTCATCTCCCAAAAGGAAAGAATAATGTTATGCTCCACAGCTCTGCCAAGGCCAAGCCTTACATGACAAAGGAGAATTTCACCAagttcatcaatgagaagcaacgAGATTCACGGCTCAACGAGACCCTGTACCCCCTGATCAGACCCGAGCAGGTCAAGAACCTGATAGAGAAGTATGAACCCACCGCATCTAATGCTAACAGAGGCCAGATCTCCCCAGAAGGCCTACTGTTCTACTTGACTGGGCCTGAAACCTCCATTGTCGCGCTTGATAAACTGGGCATTTACCAGGACATGATGCAACCTGTGCCTCATTACTTTATCAAATCCTCACACAACACCTACCTCACAGCGGGCCAGTTCTCAGGTGTGTCCTCCCCCGAGATGTACCGGCAGTGTCTTCTCGCTGGGTGTCGATGCCTGGAGCTCGACTGCTGGAAGGGGAAACCCCCAGATGAAGAGCCCATCATCACCCACGGGTTCACCATGACCACCGAAATCCTCTTCAAGGACGTTATTGAGGCTATTGCAGAGAGTGCATTCAAAACATCCAATTATCCCGTCATCCTGTCTTTTGAGAACCACGTTGACTCAGTCAAACAGCAAGAAAAGATGGCGAACTACTGCAAGACAATTTTTGGGGATGCTTTGCTGACAGATCCACTTGAGAAGTACCCTCTAAAGCCAGGACAGCAAATACCGAGCCCTGCAGAACTGATGGGTAAAATCTTGATTAAGAACAAGAAGAATAGCAAAGACACTCAAGAGGCTGCGAAGAAACCAGAAACAACAGACCAGACACCACCTCCTGCCGCTGCCAACCAGCCACAGGAAAATGCTGATCAAAAGAGCCAAGAGAGCCCAGagggagaggggcaagAGACGCCGAAAGAGGGGCAGGAAGCTGCGAAAGAGGGGCAAGATGCACCCAAAGAAGTTCAAGATGACCAAGAAGAGCAAGATGACCAAAACGAACAAGATGAAGAGAAGATGAAGAATTCTGATGAGGGTACAGCGGGTCAAGAAGTAACAGCCTATGAGGAAATGTCAGCTTTGGTGAATTACATCCAGCCAAACAAATTCATCTCTTTTGAAAATGCTAAAAAAAAGAATAAGAGCTATTCAATCTCTTCCTTCGTGGAAACGAAAGGAGGGGACTTGCTCACCAAATTTCCCGTGGACTTCATTGAGTACAACAAGAGGCAGATGAGTCGCATCTACCCCAAAGGCACAAGGATGGACTCCTCTAACTACAACCCTCAGCCATTCTGGACTGCTGGCTGTCAGATGGTAGCGCTCAACTACCAGACTATGGACTTCCCAATGCAGTTGAACATGGCCTTGTTCGAGTTCAACGGGAGGACTGGCTACATTCTCAAGCATGACTTTATGAGACGACCTGACAAGAAGTTTAATCCCTTCGCTGACAGGATTGATTCTATTATCTACTCCGGCCAGTTCCTGTCTGATAAGAATGTAAAGACGGGGGTGGAGGTGGAACTGATTGGCCTGCCTGGAGACCCCAAACGCAAGTACAAGACCAAGATGACCACCACCCCTAATGGCATCAACCCGGTGTGGAATGAGGAGCCCTTTGTCTTtgagaagATTCTACTGCAGGAGATGGCCTCTCTCAGGATAGTGGTTCTTGATGAGGGTGGCAAGTTTCTTGGACACAGAATACTCCCAGTCCATGCAATACAGTCAGGTTTCACAGATGCCTTATTCAATCCCTTAAAAGACAAGCCTTCAAAACCCAAGCCCATAGAGAAGCCTCCAGATGAGACACCAAGTGAACCAACCACTGAGACCTCCGCAGCGACACAACCAGAATCAAAGGCTGCTGAAGCTCCTGTCCAGTCAGCTGAAGTAGTACCTGCCGCCTCTGCTGAACCTGAGCCTGCCTCGCCGCCGAAATCTGACTCTGATTCAAACCCTGCTCCGTCAGATGATACTGCTACTGCCCCACCCACTGAACCCACCCCTGACCCGCCAACTGAACCTAACCCCGGCCCCTCTACTGAGCCCAAAATTGAACAATCTGCTGAACCCAACACTGCCCAGCCTACTGAACCTGAGGCGGCACCATCACCTGATGCCGAGGCAGCCCCCGAACCTGAGGCATCTACTGAACCCGACTCTGCTCTAGTTGCTGAAGTTGCTGAAGTTGCCCCAGTAGCTGTTGATTCAGATGCTGCCCCTTCGCCTCCAGTTGAACCTGAGAAAGAACCTGCAAGTACTGGCCCAGAACCGGCTACAGTGACAGTGGTGGAGTTGAAACAGCACAAGAACTTTGTGAAAATCACCAAAAAGCAGGAGAAAGAGATAAAGGACCTGGAAAAGAAGTTTCAGAAGAAGAGCGATGACCTGACGCAGAAATACAACACTCTGTTTAAGAATCTCAGCAATGCTGACAAAAAGAGGTcccagaaaaacaaagaTGGCGATCCAGGCCCCAGTACAGAGAAGGTAAAAGAGCTGAAGGAGAAACTGCAGACGGAGCTGAAGGCCCTGTGTGAGGAACAATATGACCTtgtgaaaaagaagaaagaacagCATGGCTCAGAGCAATCCATCAAACTTCAGGACATAGCTAAAGAGAAGCATGCAAGTGAAAAGAAGGCACTGAAGGATGCTCTTGATAGGAATAAGAAGGAGATAAACAGTACCTTCACTGATGAGGTGGCACAGTCGACAAAAGAGcttacagaaaaaaatgctgCGCAACAGGCAGTGCTAGAGAAGAAACAAGCAGCCACTTTAGAGGAGATCAAAGGCATAGCAAATCAGACCGCTGAGGAAGCCAGCTCTGAATATGACAAGAAGATGAAGGGCCTTCCCAGCCATGTCAGAGAAACCGTGAACTCGTGTGTCAGCCCCCACTACCCAGACCAGGTGGacaaagaggaggagaagacgGCCAATGGTGACCAGGGGGACGGTAGCGATTACGGGAAT

Function

GO: NA

KEGG:

id description
K05858 PLCB; phosphatidylinositol phospholipase C, beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186263 lncRNA downstream 252622 3760302 ~ 3760617 (-) True G148041
TU186232 lncRNA downstream 325008 3687963 ~ 3688231 (-) True G148011
TU186213 lncRNA downstream 370570 3642365 ~ 3642669 (-) True G147997
TU186193 lncRNA downstream 455402 3552159 ~ 3557837 (-) True AMCG00000084
TU186147 lncRNA downstream 549607 3463303 ~ 3463632 (-) True G147941
TU186436 lncRNA upstream 193356 4230642 ~ 4231328 (-) True G148181
TU186460 lncRNA upstream 510538 4547824 ~ 4548060 (-) True G148198
TU186647 lncRNA upstream 1037144 5074430 ~ 5077246 (-) True AMCG00000161
TU186704 lncRNA upstream 1199582 5236868 ~ 5240683 (-) True G148364
TU186748 lncRNA upstream 1303469 5340755 ~ 5342491 (-) False G148395
AMCG00000115 mRNA downstream 33913 3977716 ~ 3979326 (-) True AMCG00000115
AMCG00000106 mRNA downstream 85227 3920595 ~ 3928012 (-) True AMCG00000106
AMCG00000107 mRNA downstream 116019 3876364 ~ 3897220 (-) True AMCG00000107
AMCG00000105 mRNA downstream 208878 3780983 ~ 3804361 (-) True AMCG00000105
AMCG00000092 mRNA downstream 277637 3726337 ~ 3735602 (-) True AMCG00000092
AMCG00000119 mRNA upstream 25667 4062953 ~ 4100974 (-) True AMCG00000119
AMCG00000116 mRNA upstream 85869 4123155 ~ 4130843 (-) True AMCG00000116
AMCG00000117 mRNA upstream 122622 4159908 ~ 4179114 (-) True AMCG00000117
AMCG00000122 mRNA upstream 672580 4709866 ~ 4714039 (-) True AMCG00000122
AMCG00000123 mRNA upstream 688873 4726159 ~ 4738979 (-) True AMCG00000123
TU185384 other downstream 3527656 484720 ~ 485583 (-) True G147324
TU185352 other downstream 3620757 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 3621104 387118 ~ 392135 (-) False AMCG00000037
TU186746 other upstream 1301523 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 2024036 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 2113434 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 2171988 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 2178470 6215756 ~ 6216441 (-) False AMCG00000190

Expression Profile