RNA id: AMCG00000128


Basic Information

Item Value
RNA id AMCG00000128
length 1030
RNA type mRNA
GC content 0.55
exon number 7
gene id AMCG00000128
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 4796369 ~ 4803426 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCGCATCCAGAACGCGACCGAAGCCTTCCACCGACGCGCTTCGGGCCTTTCCGGATCATTCCGCGTAAATCCAAAGCAATAACAGACCCTCCTCCGTGGGATCTGTCACACGGAGATCAGCCTGCTGGTAGGCTGCGGTGACCTGACCCCCAGGAGGGGTCGAAGTTCAAAGTATGTTGTTCAAAAGAATCAAATATGGATTCCATTTTTCACGAGAAACACTGTCTCAACAACCTGCTGCAGGGAGAGTACTTCAGCCCCGTGGAGCTGTCCTCCATCGCACATCAACTGGATGAGGAGGAGAGGATGAGGATGGCGGAGGGTGGAGTTACCAGTGAGGAGTACAGGACCTTCCTGCAGCAACCTTCTGGGAATATGGATGACAGTGGCTTCTTTTCTATACAATGGTTTAATTTGAACTCTCTGCTGACGGGTCCAGAGCTGATTTCAGACACATACCTTGCTCTTTTCTTAGCACAGTTGCAACAAGAAGGTTACTCCATCTTCGTCATCGGAGGGAATCTCCCAGACTGTGAAGCGGACCAGATCCTGGGCATCATGAGGGTGGAGCAGAAGCAGAGACCAAAGCTGATTGGAGAAGAGGCGGCTCAGGCGGACGCCGGGCAGGGCCTGGTGGTGGAGAGACCGGTGGACACCAGTCATGGCATGGAAGGGGTTGCTGCGGATGAGGACGAGGAGAACCTGAGGAAGGCGCTCGCCCTCAGCCGACAAGACATCGAGGTGGAGGACGAGGAGGCGGACTTGCGGAGAGCTATCCAGCTCAGCATGCAAGGAAGTGTTCCAAGTGACCAAGACCCACCGTCTGCCTTAGATACAACCCTCGAGCGACCTGAATCCAAGAGCAGTCAGTAAGCCGTGGAGAATCCGCCACCAGCCCCAGATCACTCCCTGCAAATGCCCGTCCCTCTGATGCCGCTGACCCACAGCAGCGGGTCATCTCTGGGCGCTATCCACCGAGGACTGGGTTTGCAGAaagttgcaaaaaaaataaagaaaggaacattatgg

Function

GO: NA

KEGG:

id description
K11863 ATXN3, MJD; Ataxin-3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186462 lncRNA upstream 213818 4582311 ~ 4582551 (+) True G148200
TU186374 lncRNA upstream 603336 4116753 ~ 4193033 (+) False AMCG00000113
TU186391 lncRNA upstream 620653 4173437 ~ 4175716 (+) True G148146
TU186388 lncRNA upstream 634058 4160855 ~ 4162311 (+) True G148143
TU186372 lncRNA upstream 676255 4116753 ~ 4120114 (+) True AMCG00000113
TU186651 lncRNA downstream 285013 5088439 ~ 5161195 (+) False AMCG00000136
TU186654 lncRNA downstream 329183 5132609 ~ 5159533 (+) False AMCG00000136
TU186722 lncRNA downstream 509452 5312878 ~ 5314953 (+) False AMCG00000145
TU186736 lncRNA downstream 536320 5339746 ~ 5340548 (+) False AMCG00000146
TU186749 lncRNA downstream 550525 5353951 ~ 5354185 (+) True G148396
AMCG00000120 mRNA upstream 35555 4756984 ~ 4760814 (+) True AMCG00000120
AMCG00000121 mRNA upstream 90443 4685589 ~ 4705926 (+) True AMCG00000121
AMCG00000110 mRNA upstream 442122 4324509 ~ 4354247 (+) True AMCG00000110
AMCG00000111 mRNA upstream 516104 4243648 ~ 4280265 (+) True AMCG00000111
AMCG00000112 mRNA upstream 571287 4191834 ~ 4225082 (+) True AMCG00000112
AMCG00000126 mRNA downstream 3742 4807168 ~ 4809507 (+) True AMCG00000126
AMCG00000127 mRNA downstream 34159 4837585 ~ 4843986 (+) True AMCG00000127
AMCG00000132 mRNA downstream 69874 4873300 ~ 4892210 (+) True AMCG00000132
AMCG00000133 mRNA downstream 128309 4931735 ~ 4934196 (+) True AMCG00000133
AMCG00000159 mRNA downstream 137222 4940648 ~ 5085947 (+) True AMCG00000159
TU186262 other upstream 1035745 3760179 ~ 3760624 (+) True G148040
TU186257 other upstream 1072053 3720985 ~ 3724316 (+) True AMCG00000093
TU186234 other upstream 1100567 3693109 ~ 3695802 (+) False AMCG00000094
TU185878 other upstream 2392397 2403730 ~ 2403972 (+) True G147726
TU185496 other upstream 3679419 1063085 ~ 1116950 (+) True G147416
TU186772 other downstream 631732 5435158 ~ 5435762 (+) False AMCG00000142
TU186901 other downstream 1077597 5881023 ~ 5888027 (+) True AMCG00000166
TU187068 other downstream 1668005 6471431 ~ 6474232 (+) True AMCG00000201
TU187079 other downstream 1713081 6516507 ~ 6520822 (+) False AMCG00000198
TU187266 other downstream 2487240 7290666 ~ 7296664 (+) False AMCG00000216

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000360_00693283_00703172.mRNA True 835 mRNA 0.56 9 CI01000360 693283 ~ 703172 (+)