RNA id: TU186651


Basic Information

Item Value
RNA id TU186651
length 3861
lncRNA type read_through
GC content 0.38
exon number 2
gene id AMCG00000136
representative False

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 5088439 ~ 5161195 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAGGTTACGGTATGGATCAGTTAGCTATTGTTCACTCTAATCCCGAAAGGTAAACATTGTTGGAAATCTTTGCTTGTGAAttgtacactgtaaaaaaaaaaaaaaaaaaaaataaaaaaaaaaaaaaaatgctggtcTGTTTGCTACACTGAGCTTAAAGTGATGCTGTCAGGGTTTTAATTGCAAACTTGTTATTAAACGGGACGGGTCTCCTCTTACTTCAGTGCTGCGGTTACGGCTCGGAACAAAATGGCGAGAGAAATGAGGACGCGCACACAATGAGCTTCGGAGGCTGCAAATCTCCCACAGAAAACAAGTCATTAAGCTTTCAAGGTTTTCAGGTTAACCTTGACTGCCTGTCAGACGGAGGTGGGATGGGAAACACGTGTGAATTTTAAGAAAGCAAATTAGTGTTGTGTGGGTCTCTTTGAGCAACAGTTGAGGGATCCAAAGggaaattaatgtaattcaaCTTAACTCAACATCTTAcggtttgcttgtttgtttttgcttaatAAGGAGTCTAGAAATACTAATTTGCCAGGGGGACTTGGGCATTTTCTCCACATGGTTACTAGAAGGGATTCAAAGGAGAATAAGATGGGGATTAAGCATTTGTATTactgaaacacacattttatttcaaatgttggcGGGGCAGTTTTGGTCGTTTTTTAAGTTTGTGATCGAGCCGTGAGCTTTGATGCAAAAGGAACTGAAAAGTGATGAACTGAAAAGCAGATCCCGTGTGTGGataaggtgttttgtttttagttttttcctcacatttttaatttcagtttatattaaaacaatgctgCAACTGTTCTTTCTACGGTTCATCCCAAGTCTTTTGTATGAAAAGCCGTTTACCTAGCTAACTGTGTCTTTGGTATTCCATGTGTTTACACGAGAGTTAATGAAATGTCAGTAGGGGAGTTTGTGCACTATTCTGATGTGACGTATGACAGATTCCAAGGATTTGTGGTGAACGTTTTAACGTATTAATGTGTCGTGTTGGTTTTTCTGTAATTGGGGTctgaacttttattttgtggcaACACAAGTCATGCGTGGCTGTTCTTCAAATACAGTGTATTTCAACAACAGCCATTTCCATGTCTTTTCTAAGACATTAAACTGCCTTTTTCCAATAAACTAGTATCTCTTGCAGTTTTACCATTTTTGAATGGACATTATAGATTTAtaaccaataataaaaataaaactcctgCAGTTTATTGTAAATGACTTGTGTTGCTGTTCATAGTTCTTTACAGTTTAGTACCATTGCACTACAATGGCTGTTAATGTAAACTAAAAGCTGTCTGTATGTCTTTTGTAGTTGGTGTTGAGTAGTGCTGTATGCCATTCTTacagtttcagattacatttgatttcattGCAAGCCATTTTCCTTTTGCTCGCTTCACCTTTTATAAAGTAATCTTTGAGCATCGCATGCAAGCACCATTGTTTTAGAAACTGAAGTAAAATTTCCTTTGTATTCTCAATGGGTTTCTATTGAAATCCTTTAGAATATTACGCTTGTTTGGTTTAAATTATGAGATGGCAATGATGctgctgcatatatatatatgcatgcagcAGCATCATTGTTGTTTCTGCAATGAATTGGCAACAAAATGCCTTTCCATTTTCCATCCTGCATGCTTCGTTGAAAAACAGTGCAGAGAGGGtcatgttatttttctgtgacGGGATTTTTGGAGGGTTTGCTTTGTTTCCAGAATGATTTTCTGCTGTTTCTCAAGATGCTACTTTGCTTTCCTTTGTATAGAGTCAAGCAAGTGCCTTCAATGCAAAAGGCTCAGTATTTTCTTGAGAAGTGAACTTATGTCCTATGCAAGTGTTTTCTACAAACCTGCATAACCAGTTCTTTGTAAACTCTAGTATGCTTCAATGTATATAGTGTTTTTtgaaatatagtattttttaatttttaggtACCTTTGAACAGAACCTCCAGAACTTGTggtttgtttatatacacatatatattccaGTGTATATGTCTGTATAAACACGTTTCTTGTAGATTACCATGACAAGTTGTTGTATAAAGTTTCACTGGTTCTATTTTTCTACTGTTATCTCAGAAGAGGCACATAACAGTGATGAACTTAAATCTGCAACTAGTTGGCATCTTCAAAATAAACTGCTTCTATAGACTTCTGGCTCTAGTCCTGCTTTTTCAGGTCACTACTAACTTGACACCACAAGAGGGCATGTTTTGAAGATGGATCCCATGAACCACATCTTAACATGTTGGATTTCAggtgcagtaataaaataaggTTTAACAGTTTACAGAGTTTTTTTGATAGAACTACACCCTTAAATGCGTCAATAGATACACATCACACAAgccaacattttttgtttttatttgtcagaaATGCTGAAAGTAAAAAGGAAATACTACAAAAGAGACGCAAAACAAATCACGGTTGATTTAAAAACGGTCATCATAACATCCTATACATCCAGAGTTCTCCGCTAACTAACCTTCAACACCAGTTTCTCTTTTGTTACAACCAGTTTTGTAATAATGAATAAAGTGATCAATTATATGATTTGAAAACCTACTCGTGGGGTAGTTAATACTCCTGCTTTCTATCGattatattttccttattattttaaatcattattttacctGATCAATAACAAACTTTAATCAGATTTTGCCGAGTGCACACAACAGGAATGTACCCCCTTTTGGTTACGGATTACAAGGATCTTAGAAAGAGCCATTAAGGACAGAAGTAATACTACTAAGTATCTCATGGTTAACTTAGCAACATGCTGCACGGACCAGAGTCCACGTGTGACGTCTGATACACAACGCTGCCATTCTTCTGAACACGGAGAGCTTTACGaggaaaagcattttcaaagaGCCGAAACAGGAAAAACCGATACGAGAACTACATGCCACTTGCTTCGTCACCTGGAGCACGCGTTCAGAAGCCCATTTCTACACACAGTCGTTTGTCGGCCCCTAGTCTTTCACAGAGACGAATGCACTAAAACAATACTAAGGCATATACAAAGAGATGCAGGGCCTTAAACTGTAACAGCAGCCCAAAGTGTTAAATAGGGACCTTTAGAGCCACGAGAACTTCCTACAAATAccttatgtatgtatatatttttttttaggacgcgtttttatttaaaagcagccGTGGGGATGTGGGACAGTCACGCTCTTTCGAagatagattaaaaaaacaaaaaaaacacgtgGCTCTGATCGTTAAACAAATCCTAAACGTCGGAAAATGTTGCTCTTCGTGAAGACGGGGTCGAGGGGCGTGGCTGGGAGGAGGCGGGCCCTGTTCAACTGCAGTAGTACTGGCCGCCACTCATCCGCCTCCGCTTCTTCGACCGGAGTTCCTCGAAGAATCGCTGGATGTCCTCGCTGGTCACCACCTGCAGCGGAGCGGACAGGACAGCGAGACACGAGTGAGGAAGAGGCTGCTGATGGGCCAGGTAAGCTTACAATGTGTTGGAGGCCTAGCATTGCTGTTGGAGGGATTTAGCTGGTTAAAATACCTGACATGAGGCAAATTTGtccttgtgtgttttaaatcgAAAGTATACCCCGAGGCTCGGTTTCCCCTTGAGCAAAACAATAGTGTCAGCCCAATTTAATTGCACTGGGactcaatgtgtttttttttttttaacatatgcaGTGAAATTGATAGGTTCTGCTGTATTGTCTAGCTAAGGGAATTAATTAGGCTTACACACAACACTGTaccaacatgaaaaataatccaTATAAAGTAAACTCTGCTTGTACGCCACCGATTAAACTGTGGATTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186462 lncRNA upstream 505888 4582311 ~ 4582551 (+) True G148200
TU186373 lncRNA upstream 895406 4112120 ~ 4193033 (+) False AMCG00000113
TU186374 lncRNA upstream 895406 4116753 ~ 4193033 (+) False AMCG00000113
TU186391 lncRNA upstream 912723 4173437 ~ 4175716 (+) True G148146
TU186388 lncRNA upstream 926128 4160855 ~ 4162311 (+) True G148143
TU186722 lncRNA downstream 151683 5312878 ~ 5314953 (+) False AMCG00000145
TU186736 lncRNA downstream 178551 5339746 ~ 5340548 (+) False AMCG00000146
TU186749 lncRNA downstream 192756 5353951 ~ 5354185 (+) True G148396
TU186759 lncRNA downstream 221373 5382568 ~ 5388814 (+) True G148402
TU186817 lncRNA downstream 379484 5540679 ~ 5544478 (+) True G148452
AMCG00000159 mRNA upstream 2492 4940648 ~ 5085947 (+) True AMCG00000159
AMCG00000133 mRNA upstream 154243 4931735 ~ 4934196 (+) True AMCG00000133
AMCG00000132 mRNA upstream 196229 4873300 ~ 4892210 (+) True AMCG00000132
AMCG00000127 mRNA upstream 244453 4837585 ~ 4843986 (+) True AMCG00000127
AMCG00000126 mRNA upstream 278932 4807168 ~ 4809507 (+) True AMCG00000126
AMCG00000137 mRNA downstream 8866 5170061 ~ 5171426 (+) True AMCG00000137
AMCG00000139 mRNA downstream 46155 5207350 ~ 5237287 (+) True AMCG00000139
AMCG00000145 mRNA downstream 145995 5307190 ~ 5312961 (+) True AMCG00000145
AMCG00000148 mRNA downstream 159150 5320345 ~ 5329033 (+) True AMCG00000148
AMCG00000146 mRNA downstream 173318 5334513 ~ 5340550 (+) True AMCG00000146
TU186262 other upstream 1327815 3760179 ~ 3760624 (+) True G148040
TU186257 other upstream 1364123 3720985 ~ 3724316 (+) True AMCG00000093
TU186234 other upstream 1392637 3693109 ~ 3695802 (+) False AMCG00000094
TU185878 other upstream 2684467 2403730 ~ 2403972 (+) True G147726
TU185496 other upstream 3971489 1063085 ~ 1116950 (+) True G147416
TU186772 other downstream 273963 5435158 ~ 5435762 (+) False AMCG00000142
TU186901 other downstream 719828 5881023 ~ 5888027 (+) True AMCG00000166
TU187068 other downstream 1310236 6471431 ~ 6474232 (+) True AMCG00000201
TU187079 other downstream 1355312 6516507 ~ 6520822 (+) False AMCG00000198
TU187266 other downstream 2129471 7290666 ~ 7296664 (+) False AMCG00000216

Expression Profile