RNA id: AMCG00000142


Basic Information

Item Value
RNA id AMCG00000142
length 3885
RNA type mRNA
GC content 0.43
exon number 7
gene id AMCG00000142
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 5435158 ~ 5454206 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGCTACTTTTTCGAAATGCCCACGCCATCGGAAAAAAGGGCAGGCCTTTCACCGACTTCGCATGGATGTATCAGCCAAAGAAACATAATGACATGCCCCTACAAGTGCACAACCCTGAAGTTGTTTGCAGCAGTGCTCCAGCTCTTGCGAGTTTGCAGGGTGTAGGTTTACAAATCCCCAGAGAAACTCGATTCCCACGGGGAGGGAGGGGCACGGGCTACATCAGTGGCTCCGGGCCAAGCACCCTTACCCTTGATGTGCCCCTTGAAATCTTAGAAGGGGAAAGACCCCGACCCCAAGGCTCCTCCCCAGTGTATGAATATCCAGTCCCAGagaaatacactgaaataaacaaacagGAAATTGAAACCATGGAAGGATCAGATGTGATTGTGAACACAGAAAAAGAAGCATGTGCCAAAGGATTGGTCGTAAGTGGAGGGGGAAAGGACGGGATATTCGTCAAGGAAGTAATGAAAGAGTCGTCAGCGTCTAAGCGTCTCAGCCTGATAGAAGGTGATCAAATACTCAGTGCAACAGTGTTTTTCGACGACGTCAAATATGAAGACGCCCTGCAGATTCTGGAGCATGCCAAGCCCTACAAAGTGCAGTTTTGTCTGAAGCGCCACTCATCCATGACATCTGAAGGTTCCTTAACTAGCCTACAAGAAAGTGAAAAAGCCACTATGGAGAGAGGCCGCTCGAAAACTCCCCGCCGCCAAGAGGCCAGAATTTCTTGGCCTAAATTCCCGTCATTTACAAGGGGACgcaaaatgcaattcaaaagATCTCACAGCACTTCCGAAGCAGAGGAGCAGAAAAAACTAGATATGAGTCCAACATCCAGTGACACAGAATCTCCAACTAAAGGTCAGGAGCCTctgaaaaccaaaatgaaaaagccCAAGTTAAAGCTGTCAAACCTGGGAATTAAGGACCTTAGCATCCAATCAACAGATCAGCACACTACAGAGACTGTAGCAGAAAAGTCAGAGCATTTGGAAGTCATTGAGAAATCTCCAATGAAAGATGAATCCATGGTGCTTTCTTCCAAGCATCCACTAAGAAAAGAACAGGAAACACCAGAGATCTGTGCCTTCGAATCAGATGAAAATGTGGACACCACCAAGATACAAAATGAGTGCTTGCTTCCAAATGTGACAGGCCCTGAAGTTGAAATTAGCCAACACAAAGCAGAACTCATTTCTCTGGATAAGACACTCAAAACCACTGACATTTCCATTTATGGACCAAAAACTGATGATATCCTTGTTGAACCTGGTGCAGAACGTAGCCGCCCTAAAAGAACTCCAGAAGGAAAGAgaaggaagaagaaacaaagaTCAGAACTTAAAGTGAATATTAAGGGAAAAGAGAAAGGAGACTTAAGTCCTGATCACCAAGCAACCTCACCTCAAACATTAATTCTTATACCGTCGCCCCACAGTCTGGGTCCGGAGGTTCAATTTGAGCTTCAAACAACAGAACCTGGAGGCAAAACCACAGAGCAGCTGCCTCTAGGAGATGCCCCAATAAGTCCCAATGTAGTATCACATGCTGAATTGAAGGGACGTCAACTCGCCATTGATATAAACACTCAAAGAGTAGGTTCTAATAGATCTAGTATTAAAGTAGATGTGATGAAACCAAAGGTTGATGTTATGAGTACAAAGCAAACAATGAAAACTGAGGATGGCCAAAAGGAAGGATCTGATGGCCAGTTTGATGCCATTACACAAAAAATGGGGCTTCAGGTTCAAGCCCCCATCCTCAAAGTGGACAAAGACAGTAGAGAGAAGAGGCTCCCTTCACCAACAACTAAATCTGTTCTAAAATCATATGAAGCAAAGATGGAAGGCCCAGCCATTTTGGCTCAAGCTGAAAGGTGTACGATTAAGATGCCAAAAAAAGATGAGGTTGACGGGAGCATGCCAGAAGGACATTTCTCACTTAGAAAGCCACCGATTGGTCAACAGGTGTCACCTAGGACAGAGCCTGGAAAGCAAAGCAAGGACGGAAGCATACATGTTCCAGCACCAGAAGTAAGCAAAATGGTAATCAGAGGCCCATACCTGGAAATGGGCATGCCAGAGAAACATATCTTGAGTTCAGTAACAGAAATCCATACACCAAAGTTTGAGGGCAGTGATATCAGTGCTGCCACAACAGCTACTTTCTTGCAGACAGGAGATTTACGTATAACGAGGCAAACGGAACTGGAGGACATAAAAACTGCACAGGCAGAACCCACAAGTAAAACTGACAAACCTAAAATTCCTAAAACAGTTATCTCTCTCCCTGGTATTGCAGCATCTGATGAGGAAGCTGCCCTAAGCAAATCAGAGATGTTCAGCATGTCCAGGACTAAAGCTGATGTTTCCTCCCTGCCACCAGTTGTTGCAATTAAAAGCCCAGAGATGAAAAGTGAACCAGATCTTCCTCAGTCAGAAGGGAAGATAGATGTTAAAGGTTATGGGGTGGATGTACAAGCTCCAAAAATTCGTGGAGAACTGGATGCTGATGATACCATAGGTTCAATTGAAAAGTTTAAACTTCCACAGTTCAAGGTGCCTAAAATGGACCTCTCTTCTCTGGATGAGCACGAACATATCACAATGACAGATGTGAATGCTGCCAAAGCAAAACCAGACATAGTaaaagcagaaattaaagcacctAAAATGGATGTAAATATCCAATCAACAGATGCTGACAGTGGGGAAATAAAAGGCCCAAAAGGAAAATCTGACATGCCAAAACTGGAAATGGCTGAAGTGGACGTTCAGCTACCTAAAGTGAAACCACATAAATTTGGACTGAAGAAGCCAAAATCAGAGACTGgcctttatttttcaaaaccagAAATGCAAATCCAAGGTGTCAACATAGATGCCCAAATTCGATCTATTAAAAGCCCAGCTGACATCCCTGAAACTCAAATGGAGAGTGTGAAAGGAAAATTCAAGAAGCCTGAGATTAAAATACCTTCTGTTGGACTATTATCTGGAGAGTATGAGACaaccattacaaaaacagacatcTCTCACCCAAAGGCAAATATAGATATGGGTAAAGTACAAGTGACAGGCCCAGTGGTTGATCTTGAGGCTTCAGCAGCCAGAGGAGTCACTGATAAAGAAACAAAGGGACCTGGAGGAAAATTCAAGATGCCGAAGATAAAAGTGCCCCAAACTGGATTTTCAAAATCAGATGTAAAAGTCCCTCTAACAGATGTGGACATGAATGTTCCACATGGAGAAGTGAccctgaaagaaagaaagatagatgTTAAAGTCCCTGGGCTGGAATTACAAGCTACAAAGATCCAAACACAACTGGAAGGTGCAGGTATTCAAGGATCAATGGGAGACTTAAATCTACCTACATTCAAGTTACCTAAAGTTGACCTCTATGATCTTGATGGACACGAACACATCCGAGTGACTGATGTGAATGCTAGCAAAGCGGAAGAAGCCATCGGAATTAAAAACCGCAAGATTAAAAGTCAACCAGATCTTCCTAAATCAGAAGGGAAGATAGATGTTAAAGATTCAGAGGTGGAACTACAAGCTCCAATTATTCACACAGAAATGGATACTGATGATATCATAGCTTCAATTGAAAAGTTTAAGCTTCCGAAGTTCAAGCTTCCACAAATTAACCTCTCTGATCTGGATGAGCATGAACATATCACAATGACAGACGTGAATCTTGCAAAACCAAAACCAGACATTGCAACAGATAGTAGTATTCCCGAGTTCAAACTACCAAACATTGATCTTTCGGATCTTGTTTCGGATGATGTTCACAAACCAATTACAATGACACAAGTTGATGTTTCTAGCagcaatgtaaaagcagaaatgaaagcactCCCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186759 lncRNA upstream 46711 5382568 ~ 5388814 (+) True G148402
TU186749 lncRNA upstream 81340 5353951 ~ 5354185 (+) True G148396
TU186736 lncRNA upstream 94977 5339746 ~ 5340548 (+) False AMCG00000146
TU186722 lncRNA upstream 120572 5312878 ~ 5314953 (+) False AMCG00000145
TU186654 lncRNA upstream 275992 5132609 ~ 5159533 (+) False AMCG00000136
TU186817 lncRNA downstream 86473 5540679 ~ 5544478 (+) True G148452
TU186824 lncRNA downstream 223777 5677983 ~ 5678620 (+) True G148459
TU186834 lncRNA downstream 261387 5715593 ~ 5719481 (+) True G148468
TU186893 lncRNA downstream 397439 5851645 ~ 6045324 (+) True G148519
TU186924 lncRNA downstream 549985 6004191 ~ 6011397 (+) True AMCG00000175
AMCG00000141 mRNA upstream 39752 5390325 ~ 5395773 (+) True AMCG00000141
AMCG00000147 mRNA upstream 55366 5375615 ~ 5380159 (+) True AMCG00000147
AMCG00000152 mRNA upstream 62188 5340902 ~ 5373337 (+) True AMCG00000152
AMCG00000146 mRNA upstream 94975 5334513 ~ 5340550 (+) True AMCG00000146
AMCG00000148 mRNA upstream 106492 5320345 ~ 5329033 (+) True AMCG00000148
AMCG00000143 mRNA downstream 9743 5463949 ~ 5470513 (+) True AMCG00000143
AMCG00000155 mRNA downstream 78404 5532610 ~ 5535596 (+) True AMCG00000155
AMCG00000170 mRNA downstream 381280 5835486 ~ 5844974 (+) True AMCG00000170
AMCG00000164 mRNA downstream 416032 5870238 ~ 5874652 (+) True AMCG00000164
AMCG00000166 mRNA downstream 426853 5881059 ~ 5887979 (+) False AMCG00000166
TU186262 other upstream 1674901 3760179 ~ 3760624 (+) True G148040
TU186257 other upstream 1711209 3720985 ~ 3724316 (+) True AMCG00000093
TU186234 other upstream 1739723 3693109 ~ 3695802 (+) False AMCG00000094
TU185878 other upstream 3031553 2403730 ~ 2403972 (+) True G147726
TU185496 other upstream 4318575 1063085 ~ 1116950 (+) True G147416
TU186901 other downstream 426817 5881023 ~ 5888027 (+) True AMCG00000166
TU187068 other downstream 1017225 6471431 ~ 6474232 (+) True AMCG00000201
TU187079 other downstream 1062301 6516507 ~ 6520822 (+) False AMCG00000198
TU187266 other downstream 1836460 7290666 ~ 7296664 (+) False AMCG00000216
TU187267 other downstream 1836460 7290666 ~ 7296664 (+) True AMCG00000216

Expression Profile