RNA id: TU186722


Basic Information

Item Value
RNA id TU186722
length 1987
lncRNA type sense_over
GC content 0.40
exon number 2
gene id AMCG00000145
representative False

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 5307190 ~ 5314953 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaagagaatcaatatttattgaaaGTAACAGATGAATATTTGCATACAAACAATGTTCCTGCAATtgaaaaggtaaataaataacagcaaagCCACTGCTCCACTCATACTTTCTACCATATCTATGTGACCAAATTGAAACGAAGCCATCACATGTTAAAGACATACTGCAAGTCCATGTGGTGCATTTAAACTATGTTGAACATGCATTAGTCTTAAATAAGCAACACACACTATGAAAACTATTAATGGTTTGCGGTACTTCTAACTGAAAgtagtacatttatttcaaaatatttctggTCAAATAGTCCCAATAAGTTCAGCAAACATTATAtgcctccccacccccctcagtTCAAACAGCATGGGGACTCAGTCTTCACTATAGACAGACATGCCAGTTGCAGACTCATTGGTGTGAGATGCCCAAACTGGAATCTTTCACTtctaaaacaaaactcaaaacgGTTCGATTACCATTAAAAAAACGTGTACTTAAACCTTGCATTGCTACAGAATCTTTACAACCCTTTTCTCCTTGTAGTATTGGTATGTGGGCACATCAATTATGGTTTCAAAACTCCATCCTTACTGGAGccacttacattatttacttaACACTTCTATTGGTCCGTTTGcaaacatttggaaaaagtACAAGGGAGATCagtaaaaatcacatttattaacGTTGGACATTTTAATGTGTACAGGATCAAACCAACAGAAAAGCCTAACATCTTTTCATGGTGGGATTTACCAGCAACAGAAAGGATTTAGTGGTTGGGCATGTctttttatctattttattttaggtataCACACAGTAAGCTCAGATTTACGACCCTTAAAACTTCATCTTCCTCCAAAAAGGCACAGTCCTTTCGTGGTTACCAGACAGCAGCTGGTGACGGAATAACTGTGCTAAAATGAAAGCGTTTACACACGAATGAACAGGTGACTGAAGCTTGTCTTGAGTtcataattcattattataacaGTACAGTGTCTTCAATAGAGCCGTGCGCCATAACCAAAAGTCTGTTTAATTCCCTCAAAGTAATAGCGCTGCCAGCCTTGTCTGGTCCGTTCCTCTTCACTCACTGGAACTCCTTTACACTCTACCTTGAGTTCAGTCTCGTGACTTCGGTTTATGAAATTAACCGTGATGGTTGCATAATGTTCtacaaagacaaacagaagATAGTGagctaaacacacacacaaaaaacagatccTATTGCAGATCCATTCCCATTCACAGTAATGAGAATACCATTTTGATGACATTCGTCTACTTGTCTGAGGATTATTCTGATCAGTCGCCCCTCAATTGCCTTGTACATGTAAAACCTACTAAAAGAgctattttatcatttttttgttgttgttttttattataattgttgccATTATTAGTTTTGGAAATCCTACATTTTGATTCTGTATTTAAGTTGCTTTGAGCTGCAATGAGCATGAATAAAGATGTTGAAACCCAGATCTCAGGACTTACCGCAGGGCCAGGTCTTATACCTCCATTTCATAActattttttcttctggaaAGATCTAGGAATTCGCCGCAGACGTTGCCCTCCATGAGCCGAAATTTCCCCCCTTTATCACCGTCTACGACAGCGGCGGAGTGGGTGAAAGCTTGCACCATCTGTGGACAAATGACATGAAACATCACATGGACAGATGCAATAGGTTGGCTGCTGCACTTAAATAAGACAGAACATGCATTCaatgggggaggtgggggggacaCGACTATTTGTCATGGGATATTAAGAAAACTGAGATTGGTGAAAATATTTTTGCCATACAGGCTGCAGGGTGCTTGAATGGCGTTACCTCCTGATTAAGAAAGATCCTGTAGAGCTCCTCCGGGGAGGTCAGGAAAGTCTCCTTCACAGTGAACTTGCAAGTGGGGATCTTCACTCCCGTATTAGGAGTCGTCGACGAGCCACCAGGAGCGAt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186651 lncRNA upstream 151683 5088439 ~ 5161195 (+) False AMCG00000136
TU186654 lncRNA upstream 153345 5132609 ~ 5159533 (+) False AMCG00000136
TU186462 lncRNA upstream 730327 4582311 ~ 4582551 (+) True G148200
TU186374 lncRNA upstream 1119845 4116753 ~ 4193033 (+) False AMCG00000113
TU186391 lncRNA upstream 1137162 4173437 ~ 4175716 (+) True G148146
TU186736 lncRNA downstream 24793 5339746 ~ 5340548 (+) False AMCG00000146
TU186749 lncRNA downstream 38998 5353951 ~ 5354185 (+) True G148396
TU186759 lncRNA downstream 67615 5382568 ~ 5388814 (+) True G148402
TU186817 lncRNA downstream 225726 5540679 ~ 5544478 (+) True G148452
TU186824 lncRNA downstream 363030 5677983 ~ 5678620 (+) True G148459
AMCG00000139 mRNA upstream 75591 5207350 ~ 5237287 (+) True AMCG00000139
AMCG00000137 mRNA upstream 141452 5170061 ~ 5171426 (+) True AMCG00000137
AMCG00000136 mRNA upstream 155414 5140428 ~ 5157464 (+) True AMCG00000136
AMCG00000135 mRNA upstream 190648 5117082 ~ 5122230 (+) True AMCG00000135
AMCG00000159 mRNA upstream 226931 4940648 ~ 5085947 (+) True AMCG00000159
AMCG00000148 mRNA downstream 5392 5320345 ~ 5329033 (+) True AMCG00000148
AMCG00000146 mRNA downstream 19560 5334513 ~ 5340550 (+) True AMCG00000146
AMCG00000152 mRNA downstream 25949 5340902 ~ 5373337 (+) True AMCG00000152
AMCG00000147 mRNA downstream 60662 5375615 ~ 5380159 (+) True AMCG00000147
AMCG00000141 mRNA downstream 75372 5390325 ~ 5395773 (+) True AMCG00000141
TU186262 other upstream 1552254 3760179 ~ 3760624 (+) True G148040
TU186257 other upstream 1588562 3720985 ~ 3724316 (+) True AMCG00000093
TU186234 other upstream 1617076 3693109 ~ 3695802 (+) False AMCG00000094
TU185878 other upstream 2908906 2403730 ~ 2403972 (+) True G147726
TU185496 other upstream 4195928 1063085 ~ 1116950 (+) True G147416
TU186772 other downstream 120205 5435158 ~ 5435762 (+) False AMCG00000142
TU186901 other downstream 566070 5881023 ~ 5888027 (+) True AMCG00000166
TU187068 other downstream 1156478 6471431 ~ 6474232 (+) True AMCG00000201
TU187079 other downstream 1201554 6516507 ~ 6520822 (+) False AMCG00000198
TU187266 other downstream 1975713 7290666 ~ 7296664 (+) False AMCG00000216

Expression Profile