RNA id: AMCG00000149


Basic Information

Item Value
RNA id AMCG00000149
length 5712
RNA type mRNA
GC content 0.45
exon number 20
gene id AMCG00000149
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 5293188 ~ 5306080 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCTCAGATAACATTTTCTCATTGAAATTGAGTCTTCAGTGACGAACACGTAGACCTCCGTGACTAGCACTGCTTGGATACATGGATGAAAAACCGGAGTTTCACTGCTCGCGTTAACGTCTAAGATAACTTATTTGTTCAGTTATTATGTTCAGTTTCTGAACTGAATGGATTTTAACACATCTGCACAATTGTAAGGTCGTGAAAAGGATAACTACCACCGagtgattttttcccccctttttccTTCTATTTATgacaaagtgtttaaaatgacgGCTAAGATATGGCTTCTGTTTACGCTGTTGGTGGGAGTTTCATGTAGAGTGACAGCTGATGTGGAGGAGTTAAATGACACCCCTGAGGCCAAgTCATTCCACGATGCAGAGGATGAGGAGGTGCCCAGGGAGTCTCGGATTGTCGCCGGGCAGGTGCTGTTTCGCAGGGAAGAGGCTCACGAGGAAGAGGAGTTCGACAGACAGTCCGAGCCACACAGTCTGTCAGAGGGAGTGGAGATGGAAGACTTACCTTCTGAGCCTGTTCCTGTAGAAGACAAGCAGAAACAAGTGCCGCTCGTGATGGGGGGTACAGCGAGTGGGGAGCCCTGCCTCTTTCCCTTCCTGTTCCTGGGCACAGAATACTCCGAGTGCACCACTGAGGGCAGAGAAGATGGCCGTCTCTGGTGTGCCACCACCTACGACTATGAGCGAGACAAGAGATGGGGATTCTGTGAAACTGAGGAGCAGGCTAATCAGAGGCGACAGGCCCAGGAGGCGGAGGACCTATACCAGAAGGCCATCAAGATCATCAATGGGACGAGTAAGAAGAGTCAAAAGAAAGAGGAGTATAGCACGCTGATGAAAGTGGCTGAAATGGGCCACACCAAGGCCATGGAGAAGGTGGCCTATGCCATGCTTTTTGGAGATTACTTGAAACAGCAGATCCCGCAGGCAAAGGAAATGTTTGAGAAGCTGGTGGTGGAAGGATCACCCAAAGCTCAAACGGCGCTTGGTTTTCTTTATGCTGCTGGGTTAGGCGTGAACTCCAGTCAAGCCAAGGCCCTGGTCTACTACACATTTGGGGCTCTGGGAGGAAATCTGGTGGCCCACATGATTCTGGGTTACCGGTACTGGGGAGGTATAGGAGTCCCCCAGAGCTGTGAATCCGCCCTGACACACTATCGATTGGTGGCAAACCATGTGGCCAGTGATATCTCCCTGACGGGGGGCAGCGTGGTGCAGAGGATCCGCCTGCTGGACGAAGTGGAGAACCCTGGGGTGGCCACTGGGATGCTAGAGGAAGACCTCATTCAGTACTACCAGTTCTTGGCCGAGAAGGGGGATGTGCAAGCTCAGGTTGGTCTTGGACAGTTACACCTGCATGGTGGCCGTGGAGTTGAGCAGAATCATGAGaGGGCCTTTGACTACTTCAACCAAGCAGCCAATGCGGGAAATACCCATGCAATGGCCTTCCTGGGAAAGGGCAATCCAGTGGGGCAAAGTGGACTGGGAATGGCTTACCTGTATGGAAAGGGAGTTCCCGTGAATTATGACTTGGCCTTGAAGTATTTCCAGAAGGCAGCTGAACAAGGCTGGGTGGATGGACAGCTCCAGTTAGGGACCATGTACTACAATGGCATTGGAGTAAAAAGAGACTACAAGCAGGCCCTGAAGTATTTTAACCTTGCCTCACAAGCTGGGCACATCCTGGCATTCTACAACCTGGCCCAGATGCATGCCACGGGCACAGGAGTGATGAGGTCGTGCCACACAGCTGTGGAGCTGTTCAAGAATGTGTGTGAGCGTGGCCGTTGGTCAGAGAGGCTGATGGCGGCCTACAGCAGCTTCAAGGAGGGGGACTCTGACTCGGCTGTGGTTCAGTACTTGCTGCTGGCGGAGCAGGGCTACGAGGTGGCTCAGAGCAACGTGGCCTTCATCTTGGATCAGAcaGAAGAAGCGAAAATCTTCGGTGTCAATGAGACGTACCCCAGAGCCCTGCTGCACTGGAACCGCGCTGCTGCCCAGGGGTACACGGTGGCAAGGATCAAGCTGGGGGATTACCACTTTTATGGCTATGGCACGGATGTGGACTACGAGACGGCCCTGATCCACTACAGGCTGGCCTCGGAGCAGCAGCACAGTGCGCAGGCCATGTTCAACCTGGGCTACATGCACGAGAAAGGGCTGGGCATCAAGCAGGACATACATCTGGCTAAGCGCTTCTATGACATGGCAGCAGAGGCCAGTCCGGATGCCCAGGTCCCCGTGTTTCTTGCGCTGTGTAAACTGGGCCTGGTTTACTCCATGCAGTACCTACAGGAGCTCAATGTGAAGGAACTTTTTTCCCAGATTGACTTGGACCAGTTACTGGGGCCGGAGTGGGACCTGTACCTGATGACCATCATTGCTCTGCTCCTGGGCACGGTGATCGCCTACAGGCAGAGACAGCACCAGGCCCTGCCCAGACCCATGGCCCCACCACGGCCACCAGCAGAGCAGCCGGAGCCCCAGGCCGAGCAGCAGTGAgagccctgccctgccctcccTCTGTCACAGACTCCACTGGAACCGCCTGAGGACCCGCTGCCCGGCCCATAGACCCTTGCCCCTGCTGACCAGAAGGACTGCTTAGAAATAGAGACTTGGGtagacattttggagctgcctGGACTCTGGGGGGACGACATAAAAAGAAACTATAAACCCTGAGGTGTTCAGGATATACGATGTCTGTCAATACCAGCTGACAtcgctttattatttttattaaattctgTTTGGTATGCCGCGGATTTGACTCCCAAGTTGACTCCCAAGTTGACTTCTGATGGGGCCCTTTAGACTATTATGACTGGGGCGGAGGAGGAATTGACCTACAGCAGTTACACaagttatgtttttgttctgttttttctctgtttttattttattttttatttttttggggggtgcgAGATGTGAATCCAAATTCAGCCTTTCCGGTCCCTAGTCAGTTGCATTTCTAAAGATCTTTGCAAGCCATCTCATGTGGGAGTGTGGCGAGAGGCAAGGATGTCCAGCCGGGGTTTCACCCACAATGCTCTGCTCTGTtatctaaagcagtgctgcGGGGGAATCCCTCCTTCTCTGATGTATTAGACATAAGTTTGAAGACCTATCACCTATCcttgtttttaatctatatatttatatagaagaTCCGACtggttaattaatttatcattttttgtGAATACATTGTCTACATTGTAGCCTTAAGGAGAGAGGTTTGCCACTGTTAAAGAGGGAGAATAAAGGATTGGTTGTGCAGTGTTCAGACTTCACATTGTCAATGTTAAGACCAAGggctaaattaaaacataactttGACCCCCATGAAAATAGAAATCTATCAACCGTTGGTGGTTGAGTGTAGTGGGTCCAAAGTCTTGCTTTAATCTGGCCCCAAGTGTTTTTGAGAGTAACTGCTGGTTAGAGGAGAAGTTTAATTTAACTTCAGTAAACCATTCATTCTCAAGATCAGCCCCAAATCACAACGAAGTGgatgtttcatttatttgtctttctttgtgCTAGGAGTCTGTTCTTAAAACCAAATGGGGGGGGAAAATGTGTGACAGCAACCAGGAAGCACGTTTAGGTAGATGGCAAGACAAATGGTAACTTCTCAGCACAGAAAATGGCGACTACAACATACAGAGGATAAGACCGTGTGGGAGGTTGTCTTCCGTTTTTAATCCAAGGGTAGGGTTCTAGAAGGTGGGCATTATAATAATGCTTAACTGCATGTCTAGGCAAAACCATGGGGTCAAGCTTAGCAttgaaattgtttttgtaattcagCATcggctttgttttgtttcttttctgttgaaAAAGGAAGATAGAGGTTGGACACTTTGTGGGAGTAGTTCAGGTGGCATTCTGAATTCTCTGTGATCTTTTGGCAGACTGCTAGTTTTCCACTCTTAAAGTGTGGCCTTGCATTGCTTggaggatttttattttactgagcaataatgtattcacaaagaaggatttattattaataataataataataataataataataatattaaatctcTGCACTGTGCTATTTAGTGTTACTCAGAAAGTAGAATTGAGTGGATCTGCCCTCCCACCCTCCTTATATAagttctgtgctttaatttgagAGTCATTGATTGGGGCTAAAATAAAAgttccatttgttttattccccATATAGGAGAGAACCAGATTTGAAATGGGCTGTTTTAATGAGCATGATAGGCACAGCTACAGCTGACTATGAAAATAAGCATGTTGGCTTCAGCAGATCCGTACGTgggcatttttcatttttgtattttgctctgGAGTTTCCCTATGGGACACAGCCTGCTATGGATTTTTTCCAAAAGAATTGGGATCTTGAATTGAAATCCTTTTTCTTCATCCTCACTATTCCCAGAATTTCACTAAACTGTGCATTTGAGCAACCCTAATTAGTTTTAGGTAATCGGAGGTTTCGGGCATTCATTGGGAGATCAGTTACCATTGTCTGAACAAAGCTGTATCAGAAGAACTATAGGTTATAATTCCTATTTCtctgaatacaataaatgattATCTTGCCACGCCAGGTTTAAATGTTAACAGGTTATGCACCAACCCTGCTTTGGGTAATCTACATCTGGATGCTACAAAATCCAAACATAAATGATAAATCgataaatgataaatgtgtGGGAATGTAAGAGGTTGCACACATAAAACTGGCTTTTAACCCTTGCCCTTTTGTAACATTAGTACACTGCAATACAATAGAAGCTGCTTGAAAAAGCCATACCTGTTACAGTCTTGGTTATACCGTCAAATTCTACCTgatagtttctttatttttaaaaattctgAGACAACCCCAAAAGACAAAAGTATTTAATGATGGATACAATCTTTCCAAAGctcacattatatttaattgacaaATCATCTTTTAGTAGCAAACTGTCAGTCATGAATACACAGCTCACAAACTGCAATATTTCTTGTGAGGACTTGGGTTTGTTACCTTTAAAATctggtaaatacattttaagaaatttTACTCTTTCCAATTTATATACGATCAAGTATCTCCCACTGGGTACAAATGTTGCTTTGTTTATAACTTGTAATTTCTCCATGAAGTCGttgttttgcttcattttgattgaaatatataatgtacatcACATTCAGCTGTGCCATGTTTTTGAGTGAAGGCATTGGGGCTTCTTATAGGAgtccatttgtattttattaacactgctacagatacagaaaaaataGGTTTGTTATTTCATCTGTATGTAAAATAGCAATATAAAAGGTGTAATATAAATTGTCTGTACAAATTATTGTTAATAAGATGTAAAAACTCCATCATCTTTGGCTATTAAAACATGTAAGCTGTACtgtagaaaaaacaatacatcattTTCAGTGCTACATCTTTGTTAACTTCCTTTTGGGGAAATTACAAGATCAGGAAATGGTGTGATTAATCTTTCTTTATTGAAACACGGTGGGGGGGGGACATCATAGTTCATAGTTGCTTTttcaagagaaaataataataaaggtgaAGATTCAAAGAAATGCGCTTTACCCAGAActcttaaatgaaaaatgtgaaatggcTGGCTTATAAAAATGATAGATcttatttcattgtgttacttTGTGG

Function

GO: NA

KEGG:

id description
K14026 SEL1, SEL1L; SEL1 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186704 lncRNA downstream 52505 5236868 ~ 5240683 (-) True G148364
TU186647 lncRNA downstream 215942 5074430 ~ 5077246 (-) True AMCG00000161
TU186460 lncRNA downstream 745128 4547824 ~ 4548060 (-) True G148198
TU186436 lncRNA downstream 1061860 4230642 ~ 4231328 (-) True G148181
TU186263 lncRNA downstream 1532571 3760302 ~ 3760617 (-) True G148041
TU186748 lncRNA upstream 34675 5340755 ~ 5342491 (-) False G148395
TU186757 lncRNA upstream 71669 5377749 ~ 5380128 (-) True G148400
TU186775 lncRNA upstream 144920 5451000 ~ 5454248 (-) True G148416
TU186776 lncRNA upstream 149166 5455246 ~ 5455489 (-) True G148417
TU186854 lncRNA upstream 404939 5711019 ~ 5711876 (-) True G148486
AMCG00000150 mRNA downstream 7756 5274675 ~ 5285432 (-) True AMCG00000150
AMCG00000140 mRNA downstream 36800 5243028 ~ 5256388 (-) True AMCG00000140
AMCG00000138 mRNA downstream 118069 5159727 ~ 5175119 (-) True AMCG00000138
AMCG00000161 mRNA downstream 215947 5071467 ~ 5077241 (-) False AMCG00000161
AMCG00000160 mRNA downstream 226363 5000865 ~ 5066825 (-) True AMCG00000160
AMCG00000151 mRNA upstream 6403 5312483 ~ 5319529 (-) True AMCG00000151
AMCG00000144 mRNA upstream 92307 5398387 ~ 5407241 (-) True AMCG00000144
AMCG00000158 mRNA upstream 166081 5472161 ~ 5516402 (-) True AMCG00000158
AMCG00000156 mRNA upstream 215375 5521455 ~ 5528826 (-) True AMCG00000156
AMCG00000157 mRNA upstream 238749 5544829 ~ 5573070 (-) True AMCG00000157
TU185384 other downstream 4807605 484720 ~ 485583 (-) True G147324
TU185352 other downstream 4900706 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 4901053 387118 ~ 392135 (-) False AMCG00000037
TU186746 other upstream 32729 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 755242 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 844640 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 903194 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 909676 6215756 ~ 6216441 (-) False AMCG00000190

Expression Profile