RNA id: AMCG00000160


Basic Information

Item Value
RNA id AMCG00000160
length 7500
RNA type mRNA
GC content 0.53
exon number 48
gene id AMCG00000160
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 5000865 ~ 5066825 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATACGGTACTTGCAAGAGTATCACAACCGCGTGCTTCACAATATTTACCCCGTGCCATCTGGAACTGACATAGcaaacacactgaaatactTTTCTCAGACTCTGCTCAGCATTCTATCCCGCACAGGCAAGAAGGAGAGCCAGGATGCTTCCAATTTGGCAGTGCCCATGACCATGTGTCTTTTTCCTGTGCCATTCCCACTCACACCATCTCTAAGACCACAAGTCAGTTCCATCAACCCTACAGTTACTCGCTCCCTCCTTTACAGCGTGCTGCGTGATGCCCCGTCTGACCGCGGGCAGCAAAGTCGTGATGCACAGTTGTCAGAGTACCCCTCTCTGGACTATCAGGGGCTCTATGTGACGCTGGTGACCTTGCTTGACCTTGTGCCCTTGCTCCAACACGGTCAGCATGatctTGGACAATCCATATTTTACACCACGACTTGCCTCCTGCCCTTTCTCAGTGATGATATTCTGAGCACGTTACCATACACTATGATTTCCACCCTAGCCACGTTCCCCCCCTTTCTGCACAAGGACATCATTGAATATCTTAGCACGTCGTTTTTACCAATGGCCATTTTGGGCTCCACTAGAAGAGAAGGAGGTGTCCCGGCCTACGTCAACCTGTCTGCCTCCTCCATGTTAATGATTGCTATGCAGTACACCACCAATCCTGCATGGAATCCGATCCATTGCCAGCACATCGAATGCCACAATGCGATCAACAAGCCCGCTGTGAAGATGTGTATAGACCCCACACTCTCCGTTGCTTTGGGAGACAAGCCCCCACCATTGTACATATGTGAGGAGTGCAGCCAGAGAATTGCAGGGGATCATGCAGAATGGCTCATTGACGTTCTTTTGCCACAAGCTGAAATATCTGCTATATGTCAGAAGAAGAACTGCAGCTCGCATGTCAGGAGGGCTGTGGTCACCTGCTTCTCAGCCGGGTGCTGCGGGCGCCATGGCAACAGGCCTGTCCGCTACTGCAAGCGTTGCCATGTCAACCATCACAGCAGCGAGGTGGGGGCCTCGGCAGAAACCCACCTCTACCAGACGTCGCCTCCTCCCATCAACACCCGCGAGTGCGGAGCGGAGGAGCTGGTGTGCACTGTGGAGGCAGTCATTAGTTTACTGAAGGAGGCTGAGTTCCATGCCGAACTGCGGGAGTACGAGATGAACCGGCGCAGACAGATGGGCCTGTCCTCCTCACACCACTCGCTGGACAACATTGACTTCGACAACAAGGATGATGACCAGCATGACCAGAGACTCCTCAGCCAGTTTGGCATCTGGTTTTTGGTGAGCCTGTGCACCCCCAGCGAGAACACCCCCACAGAGAGCCTGGCCCGCCTGGTCAGCATGGTGTTCCAATGGTTCCACTCCACGGCCTACATGATGGACGATGAGGTGGGCAGCCTGGTGGAGAAGCTCAAGCCTCAGTTTGTTACCAAGTGGCTAAAGACGGTGTGCGACGTGCGCTTTGACGTCATGGTCATGTGCCTGCTGCCCAAGCCTGTGGAGTTTGCTCGAGTGGGGGGTTACTGGGACAAATCATGCAGCACAGTAACGCAGCTGAAGGAAGGCCTGAACCGCATTCTGTGTCTGATCCCTTACAACGTCATCAGCCAGCCCCTGTGGGAGTGCATCATGCCCGACAAAATGTTCGATATCGAGCTGTGTCCCCTGCCTTTTTCCATGGAGGAGATGTTCGGTTTCATCAGCTGCCGGTTCTTGGGGTATCCGGCCTCTGTGCAGGAGCAGGCGCTTCTCTGGCTGCATGTGCTCTCTGAGCTGGACATTGTGGTGCCATTGCAATTGCTGATAGGCATGTTCTCAGATGGGGTCAATTCTGTGAAGGAGTTAGCCAATCAAAGGAAAGCACGGGCCAGTGACACACCAGGCAACCTTGGGGCAAGGAGGgtgagCGTGGTGTCAGACCCAGGAAGGAGGgggcaacacaacacactgagcCCCTTCCCCAGCCCCTTCCGCAGTCCGTTCCGAAGCCCCCTGCGCTGCAGCCCCTTCAGGAGCCCCTTCAAGAACTTCAGTCATACCACCAGCCACCGGCCCATAGACCTGGAGAGTGAGGATGATGATATGAATCTCGGATGCTTCATTCTAATGTTTGACCTCATCCTCAAACAGatggAGCTGCAAGATGACGGGGTGACCCTGGGTCTCGACAACAGCCTGGCAAAAGACATCATCAGTATCATCAACAATGTGTTCCAGGCCCCATGGGGGGGCTCCCACACCTGCCAGAAGGACGAGAAAGCCCTGGAGTGTAACCTCTGCCAGTCTAGCATCCTCTGCTACCAGCTGGGCTGTGAGCTCCTGGAGAGAATGGCACCCAAGGAGGAGATTCGACTGGTGGAACCCACCGAGAGCCTGGAAGAGAGTCTCATCTTTCCCCGGCCTGAGTTCACCATTGGCGCAGAGATGGAGGAGGGCAACCCCTCCGGCCTGCAGGAGGACAACCCAGGCAACAAGAGCGACTCACCAGACTTTCCCTCCATGAAGAACAACACGGAGAAGAAATTCTCGTACCAGCAGCTTCCAGTGACTTTgaagctaatttatacaatattgCAGGAAATGCCCACATTTGAAGAACCTGACATTATCTTCAACATGCTGAACTGCCTGAAAATCCTCTGTCTCCATGGAGAGTGTTTATACACTGCCAGGAAAGACCACCCCCAGTTTCTGGCCTACATTCAAGAAAAGATGTTGATTCCAAGTCTGTGGCGGGTGCTGAAGTCGGAGTTCTGCCAGCTGGCCTCCTTGGCAGTTCCTCAGCTCCTCCATGCCCTAGTAGCTGTCCTTTGCCGGTTCATCGACATCAGTTCAGTGACCAAAAACCACCTACTGAAGTATTCCCTAGCCCACTCCTTCTGCTGTTTCCTGGCGGCGGTGGAGGATGTAAACCCGGCCGTGGCCACTCGGGCAAGACTGCTGTTGGACACCATCAAGAGGCCGGCGCTACAGGGTCTGTGCCTCTGTCTGGATTTCCAGTTTGACACAGTCGTGAAGGACCGGCCCATCATCCTCAgcaagctgctgctgctccactTCCTCAAGAGGGACATCCCAGCGCTCAGCTGGGAGTTCTTTGTGAACCGCTTTGACACCCTCTCACTGGAGGCCCAGCTTCACCTAGACTGCAACAAAGAGTTCCCCTTCCCTACCACTATCACAGCTGTTCGGACTAACGTTGCGAACCTCAGCGATGCTGCAATATGGAAAATCAAGAGAGCCCGTTTTGCACGAAATCGGCAGAAGAGTGTCCGCTCCCTGAGGGACAGCGTGAAGGGCCCATGCGAGTCCAAGAGAACGCTGTCGTTGCCCGAGACTCTGAGCAACAGGCTGCGTCAGAGCACCCCAGAGGATGACACAATCATTAAGGACCTCCTCCCTGAGGATGCCGGGATCGACCACCAGACGGTGCACCAGCTGATCATGGTGCTGATGAAGTTCATGGCGAAGGACAACAGCAGCGCCGAGGCCGACATCAGCAGCGCCAAGGCCTTCAACACCGTCAAGAGGCACCTATACGTGCTGCTGGGATATGATCAGCAAGAGGGCTGCTTCATGATCGCCCCACAGAAGATGAGGACCTCCACCTGCTTCAATGCCTTCATTGCTGGCATTGCCCAGGTGATGGACTACAATATCAGCTTGGGGAAGCAGCTGTTGCCCTTGGTGGTCCAAGTCCTCAAGTACTGCACCTGTCCCCAGCTGCGCCACTACTTCCAACAGCCGCCCCGCTGCTCCCTCTGGGCCCTCAAGCCACACATCCGACAGATGTGGCTCAAAGCCCTGCTGGTAGTCCTCTACAAGTACCCCTACAGAGACATGGACGTCAGTAAAATAGTCCTCCATCTGATCCATATCACGATCAACACCCTCAACGCACAGTATCACAGCTGCAAACCCCATGCCACTGCCGGTCCTCTCTACAGCGATAACAGCAACATCAGCCGCTACAGCGAGAAAGAGAAAGAGGAGGACAGTGTATTCGATGAATCTGACATACATGATACCCCGACCGGCGCTTGTAACAAGGAATCGCAGACCTTCTTCGCCAGGCTCAAGCGAATCGGAGGGAGCAAATCTGTGAAATACCAGCCTGTGGAAATGAATGCTCAGAAAAGTGAAATCGAGCTGTCCGAATACAGAGAGGCCAGTGCACTGCAGGACAGCATTTTGCGTTGTGTGAGGGAAGAGAGCATCAAAAAGAAGAGACTCCAGGCCATGAAACAAAAGTCCCTGGACATCGGGAATGCAGATTCCATTCTGTTCAACCTAGATGAGCACCGCAGGAAATCCTGCATTGATCGCTGTGAACTGGACAAGCATGGCCTGCCTATTTCCGCATGCAACACCCAGAGAGCTAAGCAGTACAACAAGACCTCTGATGAGGCTAGTGCCGAAGCCAACGAATCTCGTGAGAGACAGGGTCAACGAGAAGGCCTCTCAGAGAGCAAGCGACCGGTCATCCCTGAGGTGAGGCTCAGCTGCATGGAGACATTTGAAGACAAGGTGGAATCTCCAGGGGGGCATCAGAAAGACGACACGGACCTTATAGACCTCTCCTCTGATTCCAACTCTGTCCCGGAAAAGCACTCCATCCTCTCGACCTCTGACAGCGATTCTCTCGTCTTCGAGCCGTTGCCTCCTCTGCGAATTGTGGAAAGCGATGAGGAATTTGAAATGCAGAATCCTTCAGATGTCAAGCCAAATGGGAAACCCCATCTATCGCCTTCACCCAGCAACACTCGAAGCTTGACCCCCGTAAGTTTTGAGGACTGCACCAAGGACGATAAGGCCAGCGAAGCTGCGGACAGCCCGCTACGCCCCATTCAGAGGAGACCTTCCATATCTCCTGTGCCCCTGGCTTTGGTTGACTGCAAGGAACTCATACAGCCAGAAGAGGTGAAAGACTTATCCCAGGAGAGCCCAATGACTCTAAAACAAAAGAGAGACCTGCTCAGGAAGTCCCCTGCTCTCCCCGAGATGTCTTTGGATGACGCTAGTGATATTCACCTAGAAGACATCAAGGTTGGAGTAGGGAATGTCCTCAGCACCTCGGCGAAAACAGTCTTCCTAAATGTCCCTGATGAGATGGACGACTTCAGCGCCCAGGATGACGAGTCTGACTGCGAGCAAACGAGTGACCCCAAACCTGAGGATGAGAACGAGGAGACCGAATTCAAAATTCAGATTGTGCCCCGACAGCGCAAGCAGAGGAAGATTGCAGTCAGCGCCATCCAGAGGGAATATCTAGACATCTCTTTCAACATTCTTGACAAACTGGGCGACAACCAGGGAGAAACAGATCAGAAAGGTCTCGCAACTCTGGAAAAGCCACGAGAATCCGCGTCGGCTCCAACTCTTGAAGCTGCAATGCCTGAAACAAGCAGCCTTTCTTCAATATCAACACAGTACAGGCAAATGAAGCGTGGCTCCCTGGGTACGCTGACAATGAGCCAGCTAATGAAGAGACAGCTGGAGCATCAGTCGAGTGCCCCGCACAATATCAGCACTTGGGAAACGGGTGCGACCAAGTCCAGTCTGTTGTCAGCGCCCAGCACGGTCAGTATGTTTGTCCCCGCACCCGAAGAGTTCACAGACGACCAGCCGACCACCATGACAGACAGGTGCCACGACTGCGGTGCTGTTCTTGAGGAGTACGACGAGGAGACACTGGGGCTGGCGGTGGTTGTGCTCTCCATGTTCATTCATTTAAGCCCAGACTTGGCTGCCCCTCTGCTCCTTGACATCATGCAGTCTGTGGGAAGgtTAGCTTCCAGCTCAAATTTTTCCGGTCAAGCGGAGAGTATAATGATCCCGGGCAATGCTGCTGGGGTGGCCAAGCAGTTTCTTCGCTGTGTGTTTCATCAGCTGGCTCCCAATGGGATCCTCCCGCAGCTCTTCCAAAGCAATATTAAAGATGGAAGTTTTCTCCGAACACTGGCCTCTTCTCTGATGGATTTTAATGAGCTGAGCTCTGTTGCGGCACTAAATATGCTTCTGGAAGGTCTAAACAATAAGAAGAGTCTACCAGCAGGGGGAGCCATGCTGCACTGTCTTGACAATATCGCCACGTTCATGGAGGCTCTTCCAATGGACTCTCCCAGCAATCTGTGGACGACCATCTGTAACCAATTCCAGACCTTCTTAACTAAACTGCCCTCGGTTTTACCTCTGAAGTGTCCCTTGGACTCCAGTTTAAGAATCATAATTTGCCTCCTGAAGATACCCAGTACAAATGCTACAAGGCTGGAGACTTGCTTTACAAAGAGTAGCATCCTTCTCTCATTTCAGAGCCTGCTGGAACCCTTCTCCAAATTACTGAGCTTTGTGATTCAGTATGCCGTGTTCAGCCTCTCCTACCTTGTGGAGCTCTGTGGCTTGTGCTATCGAGCCTTCAACAAGGAACGGGACAAGTTCTATCTGTCTCGCATTGTGGTGTTGGAGCTGCTGCAGGCTTTAAAGTTCAAATCTCCTATCCCAGACACAAACCTACTCCTACTGGTCCAGtttgtctGTTCAGATGCTGGAACCAGACTAGCTGAATCAACAATTCTGCAAAAGCACATGATTTCCTCCTTACCTGGGGGCACCACTGCAGCAATGGAATGCATGAGGcaatacattaatgaattacTGGACTTTATTGCAGATATGCATACTTTGACCAAATTAAAAAGCCACATGAAAACCTGTTGCCAGCCCCTGCATGAAGACACATTTGGGGGCAATCTGAAGGTGGGCCTGGCACAAGTGGCAGCCATGGAGATCAGCAAGGGCAATCACCGGGACAACAAAGCCGTTATCCGATACCTGCCATGGCTTTACCATCCTCCTTCAGCCATGCAGCAAGgACCTAAAGAGTTCATTGAGTGTGTGTCTCATATAAGGCAGCTCTCGTGGCTTCTGCTTGGATCGCTTACCCATAGTGCATTGCATCAGGGTTCTACTTCCTGTATGCCCATTCCACTTGATGCTGGTTCTCAGCTGTGGACCATCTACTGTGAGCAGGCTGCAGCTGCCCCCACGGTGCAAAACCAGAATGAATTCTCCTCCACTGCCATCCTGACTGGCCTAGAGTTCTGGAGCCGAGTCACCCCAAGCATCCTGCAGCTCATGGCCCACAACAAAGTGATGGTAGAAATGGTGTGTCTGCACGTAATCAGCCTAATGGAGGCTCTTCAGGAATGCAATTCAACAATTTTTGTCAAGCTCATTCCTATGTGGCTGCCGATGATTCAGTCCAACTTGAAGCACTTGTCAGCAGGGCTACAGTTGCGGCTGCAAGCCATCCAGAACAACGTGAACCACCAGCATCTCCACAGCCTTCAGTCCTGTGGGCAGACCAGCCCTATTCCTTCAGTTCTCCGCAAGTGGCTGCAGTGCACTCAGTTCAAAATGGCCCAAGTGGAGATTCAGTCCTCAGAAGCAGCTTCGCAGTTTTATCCCTTGTGA

Function

GO: NA

KEGG:

id description
K24014 UNC79; protein unc-79

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186460 lncRNA downstream 452805 4547824 ~ 4548060 (-) True G148198
TU186436 lncRNA downstream 769537 4230642 ~ 4231328 (-) True G148181
TU186263 lncRNA downstream 1240248 3760302 ~ 3760617 (-) True G148041
TU186232 lncRNA downstream 1312634 3687963 ~ 3688231 (-) True G148011
TU186213 lncRNA downstream 1358196 3642365 ~ 3642669 (-) True G147997
TU186647 lncRNA upstream 7605 5074430 ~ 5077246 (-) True AMCG00000161
TU186704 lncRNA upstream 170043 5236868 ~ 5240683 (-) True G148364
TU186748 lncRNA upstream 273930 5340755 ~ 5342491 (-) False G148395
TU186757 lncRNA upstream 310924 5377749 ~ 5380128 (-) True G148400
TU186775 lncRNA upstream 384175 5451000 ~ 5454248 (-) True G148416
AMCG00000134 mRNA downstream 107498 4892489 ~ 4893367 (-) True AMCG00000134
AMCG00000131 mRNA downstream 140376 4843992 ~ 4860489 (-) True AMCG00000131
AMCG00000129 mRNA downstream 163315 4807171 ~ 4837550 (-) True AMCG00000129
AMCG00000130 mRNA downstream 204716 4765184 ~ 4796149 (-) True AMCG00000130
AMCG00000125 mRNA downstream 249685 4749902 ~ 4751180 (-) True AMCG00000125
AMCG00000161 mRNA upstream 4642 5071467 ~ 5077241 (-) False AMCG00000161
AMCG00000138 mRNA upstream 92902 5159727 ~ 5175119 (-) True AMCG00000138
AMCG00000140 mRNA upstream 176203 5243028 ~ 5256388 (-) True AMCG00000140
AMCG00000150 mRNA upstream 207850 5274675 ~ 5285432 (-) True AMCG00000150
AMCG00000149 mRNA upstream 226363 5293188 ~ 5306080 (-) True AMCG00000149
TU185384 other downstream 4515282 484720 ~ 485583 (-) True G147324
TU185352 other downstream 4608383 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 4608730 387118 ~ 392135 (-) False AMCG00000037
TU186746 other upstream 271984 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 994497 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 1083895 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 1142449 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 1148931 6215756 ~ 6216441 (-) False AMCG00000190

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000390_00016396_00025312.mRNA True 1415 mRNA 0.51 9 CI01000390 16396 ~ 25507 (+)