RNA id: TU187005


Basic Information

Item Value
RNA id TU187005
length 1257
RNA type TUCP
GC content 0.46
exon number 4
gene id AMCG00000168
representative False

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 6150720 ~ 6154301 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGCAGTGGGTGTTTCCGCAATCCGCCCGGAGCTGCAGGGTGAAGCACAGCGCCAGGGCAGGAAGGCTTCCCGTTTCCCAGCTTGGCAGCCGCGACACTCGCCACACACCATCCCCGGGGGACGCATCGGACTCGCCGCGGAGAGGAGCCGGACGCCAAGTGCAGCCATGCCTTACGTGCTCATCAGCACACAGATCCGCCTGGAAACGGGCCCTACTATGGTGGGAGATGAGTACTCTGACGTCACGCTGATGAACTATTTAGGAGCTCGGAAGACAACAATGTTGGGCAACAACTTTTCTGAATACCATGTGGATGAGCCACCGAGGGAAGTTCTGGACAAACTGGAGAAGATTGGCTACCGTGTGGTGAGCATGACCGGAGTGGGCCAGACGCTGGTGTGGTGCCTGCACAAGGAGACGCTGTGAGCTGGGCAGAAATCTAACGTCAGTTTTTAATGGAACGGTATGCAACTTGGGATAATACTCTATTATGCAGCCTATCAATGAGACTGGTTGCATTGTGTGGCAGTGGAAGGACAAAGCAGCTGCAAGTGCTGCTGACAGATACCTGTCCTCGCTTTTAAGAACTGCTCCACAGTGACAGGACCACGCCAGAATGAATCCCGTAGGTCTTGGCTCTGTGTTTTCTATGCTCCTTTTATCATACATTCCAGACGGTACTTAAACCCAAGTGTAAATGGAATTGAAACGGAATGGCTAATGTCTTACAGAATGATCAAGGTTCAATGCCAACTGACATCATTCATGTCCACCACGGCTGCAAAAACTCGAATATGTAACGAGAGGAAAGTACCCAGCAAAAGACCCAAATTCCTTTCTCTGTAACTCTGTGGAAGAATGGTTTATGAAAACTATAAGCAGTGTCACTTATGTTCTTTTGTGAACAACACTGTATAGTCTAGATCCAGTAGAGcatgtaaaatacttttgagttgatattgtacagtttattttctccacagactgttgttttgttattctatTGTCCTTCTCCGAGTGTGGCCCATggtagatacacacacagagatgagTGAAAATACTACTGAACTTTAAACAATTGTTATTCCCAGTTGAGCGTCAATCATCTATCCACAAAGCTAAATAAGAAGTTTGGGTGCAGGAGAATGGTACGTCTGCATCCCTTGAATGAAGCAAATGTGAAGCtgaaattgtataaattaaatgaatgcaatggaaaacaaatccataaaaataaatctatccTATACAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187002 lncRNA downstream 2434 6147929 ~ 6148286 (-) True G148610
TU186961 lncRNA downstream 138083 6004186 ~ 6012637 (-) False AMCG00000180
TU186962 lncRNA downstream 138083 6004186 ~ 6012637 (-) True AMCG00000180
TU186854 lncRNA downstream 438844 5711019 ~ 5711876 (-) True G148486
TU186776 lncRNA downstream 695231 5455246 ~ 5455489 (-) True G148417
TU187110 lncRNA upstream 402439 6556705 ~ 6563305 (-) False G148692
TU187113 lncRNA upstream 403576 6557842 ~ 6563305 (-) True G148692
TU187241 lncRNA upstream 986096 7140362 ~ 7140968 (-) True G148801
TU187436 lncRNA upstream 1604416 7758682 ~ 7758963 (-) True G148962
TU187485 lncRNA upstream 1801706 7955972 ~ 7956264 (-) True G149002
AMCG00000169 mRNA downstream 24360 6125794 ~ 6126360 (-) True AMCG00000169
AMCG00000179 mRNA downstream 80888 6067655 ~ 6069832 (-) True AMCG00000179
AMCG00000177 mRNA downstream 83547 6045665 ~ 6067173 (-) True AMCG00000177
AMCG00000176 mRNA downstream 120924 6017546 ~ 6029796 (-) True AMCG00000176
AMCG00000180 mRNA downstream 138101 6010416 ~ 6012619 (-) False AMCG00000180
AMCG00000189 mRNA upstream 53248 6207514 ~ 6209577 (-) True AMCG00000189
AMCG00000190 mRNA upstream 59739 6214005 ~ 6216062 (-) True AMCG00000190
AMCG00000188 mRNA upstream 90453 6244719 ~ 6258200 (-) True AMCG00000188
AMCG00000187 mRNA upstream 106354 6260620 ~ 6279544 (-) True AMCG00000187
AMCG00000191 mRNA upstream 130743 6285009 ~ 6288346 (-) True AMCG00000191
TU186991 other downstream 83536 6061322 ~ 6067184 (-) False AMCG00000177
TU186746 other downstream 808229 5338809 ~ 5342491 (-) True G148395
TU185384 other downstream 5665137 484720 ~ 485583 (-) True G147324
TU185352 other downstream 5758238 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 5758585 387118 ~ 392135 (-) False AMCG00000037
TU187023 other upstream 55008 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 61490 6215756 ~ 6216441 (-) False AMCG00000190
TU187117 other upstream 403576 6557842 ~ 6563305 (-) False G148692
TU187112 other upstream 404560 6558826 ~ 6563305 (-) False G148692
TU187302 other upstream 1206956 7361222 ~ 7362692 (-) True G148851

Expression Profile