RNA id: TU186991


Basic Information

Item Value
RNA id TU186991
length 343
RNA type TUCP
GC content 0.43
exon number 3
gene id AMCG00000177
representative False

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 6045665 ~ 6067184 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAGTGTAAAAATGCAGCTCTATCGGTTCAGTGTAATCATGAACGAGCTCCACTCCACAGACAACGTGCCCTACATGGTCACCCTCTTGAGTGTCATCAACACCCTCATCCTAGGAGCCGAAGACCTGCGGTTCAGGGACAAAATCAGGAAGGAATTCATAGGACTGCAGTTACTGGATAAACTGCAGAATTTAAGGGAAAATGAAGATGACGATCTGTTAATCCAATGTGACACATTTGAAGAAACCATgtctgatgatgatgaggagTTATTGAGGATATATGGTGGCATTGATATGAGCAGCCATCAGGACGTTTTCATCACACTTTTTAACAAAGTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186961 lncRNA downstream 48685 6004186 ~ 6012637 (-) False AMCG00000180
TU186962 lncRNA downstream 48685 6004186 ~ 6012637 (-) True AMCG00000180
TU186854 lncRNA downstream 349446 5711019 ~ 5711876 (-) True G148486
TU186776 lncRNA downstream 605833 5455246 ~ 5455489 (-) True G148417
TU186775 lncRNA downstream 607074 5451000 ~ 5454248 (-) True G148416
TU187002 lncRNA upstream 80745 6147929 ~ 6148286 (-) True G148610
TU187110 lncRNA upstream 489521 6556705 ~ 6563305 (-) False G148692
TU187113 lncRNA upstream 490658 6557842 ~ 6563305 (-) True G148692
TU187241 lncRNA upstream 1073178 7140362 ~ 7140968 (-) True G148801
TU187436 lncRNA upstream 1691498 7758682 ~ 7758963 (-) True G148962
AMCG00000176 mRNA downstream 31526 6017546 ~ 6029796 (-) True AMCG00000176
AMCG00000180 mRNA downstream 48703 6010416 ~ 6012619 (-) False AMCG00000180
AMCG00000178 mRNA downstream 60660 5992473 ~ 6000662 (-) True AMCG00000178
AMCG00000167 mRNA downstream 76749 5971780 ~ 5984573 (-) True AMCG00000167
AMCG00000172 mRNA downstream 239196 5791583 ~ 5822126 (-) True AMCG00000172
AMCG00000179 mRNA upstream 471 6067655 ~ 6069832 (-) True AMCG00000179
AMCG00000169 mRNA upstream 58610 6125794 ~ 6126360 (-) True AMCG00000169
AMCG00000168 mRNA upstream 83539 6150723 ~ 6154301 (-) True AMCG00000168
AMCG00000189 mRNA upstream 140330 6207514 ~ 6209577 (-) True AMCG00000189
AMCG00000190 mRNA upstream 146821 6214005 ~ 6216062 (-) True AMCG00000190
TU186746 other downstream 718831 5338809 ~ 5342491 (-) True G148395
TU185384 other downstream 5575739 484720 ~ 485583 (-) True G147324
TU185352 other downstream 5668840 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 5669187 387118 ~ 392135 (-) False AMCG00000037
TU187005 other upstream 83536 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 142090 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 148572 6215756 ~ 6216441 (-) False AMCG00000190
TU187117 other upstream 490658 6557842 ~ 6563305 (-) False G148692
TU187112 other upstream 491642 6558826 ~ 6563305 (-) False G148692

Expression Profile