RNA id: AMCG00000184


Basic Information

Item Value
RNA id AMCG00000184
length 5674
RNA type mRNA
GC content 0.48
exon number 38
gene id AMCG00000184
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 6521027 ~ 6552330 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACGTATTTTGTGCGCCAACAGTAACAGAGCAGTGTTGGCGACACATCTTAGCGTTTCACTTGaaaaaagttgtatttgtaTACACGAATAAGTATTATACAGCATGACTGTACTTTCGATAGGAGAAATGTAACTGTAGTACAATACGTGTCGGATACAACAGCGCAGTTTCAGTGTGGCGTGAGTGTTTAGTAATGAGTGCTGTGCAACAGAATGAGCTCTTCTGACAGTGCTGCAGACCAGCCCGACGATTACTCTGATCAACAGAAAAATGAACTGGAAGCACTTGCCTCCATCTATGGAGATGATTTTGAGGACTGCGGCAAAAGAAAGCCTTGGAAGgTTAAACGCCACCCAGAAGTGTACTTACATCTGCGCCCTAAGGGTTTGAGCTCGAAAGAAGAGGTCTATGTAAGGGTGGATCTGCAAGTTAAATGCCCACCTAAGTACCCTGATGTGCCTCCAGAACTTGAGCTCAGAAATGCCAAAGGCCTCTCCAATGAAAATCTTCAAAACCTCCAGGCAGAGCTTAACAAGATGGCCGCCGAGCTCTGTGGCGAGGTGATGATATACCAGCTGGCAGAGCACGTACAGGGCTTCCTCAGTGAGCACAATGTCCCGCCGCCCAAGTCCTTCCATGAGGAGATGCTGAAGAACCAGCGGCGGCAGCAAGAGAGACTGGCCCAGGAAGAGCAGCAGAGGATGGACCAGcaaaggaagagagaggagcAGATGCAAAATGAGATTCTAGCTGAGATCcagagaagagaagaagagaagagagaagaaaaaaagaggaaagaaatggCCAAACAgGAGCGCTTGGAGAGTGTATCTCTGGCCGGCTCAGAGAGCCCTGTGCAAGGGAAGCATCTATcaggtgtcagtgtgtgtgccaTAGAGCTGACTGAGCCCAAGAAAGTAGGCAACAATCGAAGACGCACAAATTCCAGTGGGCGCAACAGACGCGATCAACATTATTCCTCAGGTAGCAATGATGACAGCCCCAAACCACTTGAGGTTTTGTTCTTCAGTAATGCTGCTTTGGGAGAAATTAATGTACAAAGAGGGAAATGCATTGGGGAGAGCGAGACGTTGGGGCGCAGCGTTTATTATGGCTTCGAGGTGATGGCGGGGGACTTTGTGATTGTATATGAATGGATCCTGAGGTGGAGTAAAAGGATTGGGAAGTTTTTTACAAgccaggaaaaggaaaaaattgaaaagtgtAAAAAGCAGATCCAAGGGGCAGAGAATGAACTGAACTCATTGCTGAAACTGGACCACCCCAACCTTGTGCATTACACTGCCTTAAACCACAAGGAACTGGAGGACTGTATTGTAGTTGACCTCTTAGTAGAGAATGTCAGTGGGTCCAGCCTCTCCCAGAGCCTCAGCAAAGGCACTCCCCTTCCCATGGAGAGGGTCCGCCACTacgcctcacagctcctggctGCCCTCGATTACCTCCATACCAACTCGGTGGTGCACAAGCTCCTGTCCTCCTCCAGTGTCCTGGTGGACAGCGAGGGCAACATCAGGCTCACAGACTACAGCATTTCCAAACGCCTGGCCGACATCTGCAAGGAGGACATCTTCGAGCAGACCAGAGTGCGCTTCTGCGAAGACGCGCTGCCCAGCAAGTCGGGGAAGAAGGGCGACGTGTGGAGTCTGGGCCTGTTGCTGCTGGCTCTGAGCCAGGGCCGAGAAGTGAAGGAGTACCCAGTCCTGGTCCCCAGCAGCCTGCCCAGCGAATTCCAGGACTTCCTCAACAAatgtgtgtgtttgaacgATGCCGAACGCTGGAACACCCAGCAGCTCCTAGCTCACTCATTTATCAATCCTCCCCTGGTCAAAACCCCGTCGCAGTGCAATGATGACAGCCCTGAAGATACGGGAGTAGACTTTGCATCAACTGTTATACCCCGCACCTACATTCTCAACACACCCTTCAGTACAGACATACAGAAACAGTTTTCACGTTACTACAACGAGTTCGAGGAGCTGCAGCTTCTGGGGAAAGGAGCTTTTGGAGCCGTTATAAAGGTCCAGAACAAGCTGGATGGGTGTTACTATGCCGTGAAGCGCATTCAGGTGAACCCGGCCAGCAGACAGTTCCGCAGGATCAAAGGCGAGGTCACGCTGCTGTCGCGGCTGAACCATGAGAACATCGTCCGCTACTACAACGCCTGGATTGAGAGGCACGAGATGCCCTCCTCGGGGGTCCTGAGCAGCGACAGCTCCGAGCCCAAGAGCTTTCCCGAAAAGCCCCTCAGGGACCAGGTGAACGAGCTGGGGCTGGCGGACAATGTGGAAGACAACGCCCCCCCGCCTGCCCTGGCCAGCTCGGTGGAGTGGAGCACCTCCCTGGAGAGGTCCTCAAGTGCCAAGTGCAGCGCTGGAGATCAGGAGTCCAGCGatgacgaggaggaggaggaggatgtgTTCTGTGCCTCGTTTCTCCCAGTAAACAGTGACTCTGAAAGTGACatcatttttgaaaatggagACAGCGGAGATAGTCTTTCCCGGGTTGAACAAAGTGAAAGGAAAACCACAGAGACCACTAGGAGCAGTGAGCTGGACAACCTGGTTCTGACAGCACATTATCTGTACATTCAGaTGGAATACTGTGAAAAAAGCACTTTAAGAGATACTATTGACGAGGGATTGTACCTGGACACCAATCGCCTCTGGAGGCTCTTCAGAGAAATTCTGGATGGCTTGGCTTACATCCATGAGCAGGGGATGATTCATAGAGACCTAAAGCCTGTTAACATCTTCTTGGATTCCAATGACCATATGAAAATAGGAGACTTTGGATTGGCGACAGATCATCCAGCTAATGTGGCTGCGGACAAACTTGAAATAGAGGAGAGTGGCTCAGCTATGATGGCTAAGCAAGATGCAACAGACAATATGACTGGTATGGTGGGCACTGCCTTATATGTCAGTCCAGAGGTCCAAGGAAATACCAAAGCTACATACAACcagAAAGTGGACTTGTTCAGTTTGGGAATCATCCTCTTTGAGATGTCTTACCGCCCAATGACAACGGCATCTGAGCGAATCACTGTGCTCAGCCAGCTACGCTTGCCATCCATTGAGTTTCCAGAGGACTTTGATGAAGCTAAAAGTGGACGACAgAAGCTAGTCATCCAGTGGCTGCTGAACCACGACCCCGCCCTGCGGCCGACTGCGGTGGAGCTCCTGAAGAGCGAGCACCTGCCCCCCCCTCAGATGGAGGAGTCCGAGCTGCACGAGGTCCTGCAGCACACCATGGCCAACGTCAACGGCAAGGCCTACCGCAACATGGTCAACCAGCTCTTCTCCCAGAGCATCTCCCCAGTCAGCGACTACACCTACGACATGGACCTCTACAAGGTTAATTTCTCTCCCAGTGTTGCCAAATTACAACAGTATGTGTATGAAGTAATAAGCAGGATCTTTAAAAAACACGgagCAGTGAAGCTACAAACTCCTTTTTTCATGCCAAAGAATAAGAAGCTTTATGAGGGCACAGAATTGGCCTGTTTTATGGACCATAGTGGGATGCTCGTCACATTGCCTTACGACCTTAGACTCACATTTGCCAGATTTGTGGCAAGAAATAAcatcacaaatttaaaaagATACAGTATTGAGAGAGTTTTCCGTCCCCGCAAGCTCGATCGCTCTCATCCGCGGGAGCTCTTGGAATGTGCTTTTGACATTGTTACATCCACATCCAACAACCTTCTGCCAGATGCAGAGACGATATACACCATCTCTGAAATCATCCAGGAGTTTCCTGTCCTTCAGGAAAGAAACTACAGTATTTACCTGAACCATACGAGCTTGCTCAAAGCCATCCTGCTGCATAGTGGAGTACCCGAGGACAAGCTCAGCCAATCTTCCAGTATTCTCTGTGATGCCATGAGTGAAAAGCTGACACAACGTGAAGTAGAAGCTAAGTTTTGTAACTTGGCCCTTTCCACCAACAGTTTACAGACGCTGTACAAATTCATTGAGAAGAAAGGGGAGCTGAGAGAACTAATTCCTGTGATCAACACCCTGACCAAACAGAAGACTGCAGTAACTCAACTGGCCAAGCAGGGGGTGAAAGACCTGGAGGAGATCACAGGGCTGCTGCAGAAACTGGGAGTCAAACTTCAGGTCGTGATAAACCTGGGCCTGGTGTATAAAGTGCAGCATCACAGCGGagtcatttttcagtttgtagCATTTGTGAAGCGCAGACACCGCACTGTGCCGGACATTGTGGCAGCTGGAGGAAGATACGACCACCTGATCCCAGAGTTCCGTGGCCCAGAGTCCACTGCACCCGTCCCTGCTGCTGTGGGGGCCAGTCTGGCACTGGACAAGGTGTGTGTTGCCTTAGCCAACATGGAAGAACCGCCATTAGTAAGCTCCTGTGACGTGTTAGTGGTTCCTGTGGGCCAGTCTTCAATGGCTCGAGCCATCCACACCATTCAGAAGCTGTGGAATGCTGGCGTGTCAGCTGATATCATATATGACGTGTCACAGCACTGCAGACAAGCTGGGATCACCTGCATAGCGCTGGTCTCCGATAAAGAGGGAAACTATATCAAGGTAGAGGGCTTTGTTCAAAATTTAGAAATCTCTGAAAGTGTTTCACTTCAGAATCCCAAGGGATCACTTTTGACTCCTTCAGGATCATCTGATCCACACGGGAGCAACACGATGCTGAATGTGAATGTTATAGCACCAGAAAAAGTGTCTGCAAGCACAAGACGACGTTACGAAACACAGatacaAACCAGACTTCAGAATCTTGCCAGTAATTTGCAAAACAAGACCGATATTGAAGTTTTAGCAGTCGATTTGGCCAAGGAAATTCTAATTAACTTCTTGTCATTGGagTGCGACGGGGACGAGCAGCAGTTCAATTCCAGTGTCAAGCAGCTGCTTTCGCGACACCCAAAGCAACGCTATTTGAAATCCATCTGTGAGGAGATTCACCATTTCAAAATAGTGAAAAGGGTGGCGGTGCTGGTTTTGTACAGCTACAGAGAAGACTACTACAAGATCCTCCTGTAAACCTCAAGATCTTCTGCCCCAGTCACACAAGGAAAGTCTGTTAGTGAAGCTTGATTTTCATTCTCACTCTCTTCTTCTTTTACCAAAgtgtacatttgcatttaaaatgttttctctctcagaTAAACTAAAATGAAGAGCTTTTAAAGAGGAAGGAGCAAATTAAGTTCTTGAATGGCTGTAGTCTCAATTCAAATGAAGGCAAATTCAGCTTTAAcctacagtttttattttattttactttttggaaatctaaatGTCAAGCCCTATGGTTATTTCATACGGTTCTGCTCTATGTTTGTAGTTGATAATAGTAAGATAAAATCATGTCTGTAAGTGGATTGAAATGATTatggtaaaagaaaaaacagtggACCAGGCAGGTAttgttacatttcagaaactagttttgtatacaaaaaaaatggaagCCTTTTACTATAAATGCtgcattaaaaatactgtattttcccTTTATCAGAGTTATTCTTTCAGGTGTTATGTTAATTCCAGAGATCTATGGTTGCGGTCACAAGTATTTGCTCAAAAGAGGTTCAATTCCATCCTTTGTGGAAAACTGGCCTACCATTGCTGTGTGAATATTTGCAATGA

Function

GO: NA

KEGG:

id description
K16196 EIF2AK4; eukaryotic translation initiation factor 2-alpha kinase 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187002 lncRNA downstream 372741 6147929 ~ 6148286 (-) True G148610
TU186961 lncRNA downstream 508390 6004186 ~ 6012637 (-) False AMCG00000180
TU186962 lncRNA downstream 508390 6004186 ~ 6012637 (-) True AMCG00000180
TU186854 lncRNA downstream 809151 5711019 ~ 5711876 (-) True G148486
TU186776 lncRNA downstream 1065538 5455246 ~ 5455489 (-) True G148417
TU187110 lncRNA upstream 4375 6556705 ~ 6563305 (-) False G148692
TU187113 lncRNA upstream 5512 6557842 ~ 6563305 (-) True G148692
TU187241 lncRNA upstream 588032 7140362 ~ 7140968 (-) True G148801
TU187436 lncRNA upstream 1206352 7758682 ~ 7758963 (-) True G148962
TU187485 lncRNA upstream 1403642 7955972 ~ 7956264 (-) True G149002
AMCG00000182 mRNA downstream 40727 6475441 ~ 6480300 (-) True AMCG00000182
AMCG00000191 mRNA downstream 232681 6285009 ~ 6288346 (-) True AMCG00000191
AMCG00000187 mRNA downstream 241483 6260620 ~ 6279544 (-) True AMCG00000187
AMCG00000188 mRNA downstream 262827 6244719 ~ 6258200 (-) True AMCG00000188
AMCG00000190 mRNA downstream 304965 6214005 ~ 6216062 (-) True AMCG00000190
AMCG00000205 mRNA upstream 46794 6599124 ~ 6624326 (-) True AMCG00000205
AMCG00000207 mRNA upstream 86249 6638579 ~ 6659202 (-) True AMCG00000207
AMCG00000206 mRNA upstream 117883 6670213 ~ 6671949 (-) True AMCG00000206
AMCG00000210 mRNA upstream 306676 6859006 ~ 6861428 (-) True AMCG00000210
AMCG00000192 mRNA upstream 364344 6916674 ~ 6921676 (-) True AMCG00000192
TU187026 other downstream 304586 6215756 ~ 6216441 (-) False AMCG00000190
TU187023 other downstream 311070 6209274 ~ 6209957 (-) False AMCG00000189
TU187005 other downstream 366761 6150720 ~ 6154266 (-) False AMCG00000168
TU186991 other downstream 453843 6061322 ~ 6067184 (-) False AMCG00000177
TU186746 other downstream 1178536 5338809 ~ 5342491 (-) True G148395
TU187117 other upstream 5512 6557842 ~ 6563305 (-) False G148692
TU187112 other upstream 6496 6558826 ~ 6563305 (-) False G148692
TU187302 other upstream 808892 7361222 ~ 7362692 (-) True G148851
TU187495 other upstream 1543635 8095965 ~ 8106839 (-) True G149011
TU187735 other upstream 2483227 9035557 ~ 9045855 (-) False AMCG00000260

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01020513_00000265_00000686.mRNA True 334 mRNA 0.55 2 CI01020513 265 ~ 686 (-)