RNA id: AMCG00000187


Basic Information

Item Value
RNA id AMCG00000187
length 6523
RNA type mRNA
GC content 0.41
exon number 22
gene id AMCG00000187
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 6260620 ~ 6279544 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTTTTGTAACGGCGgttaaatttgaaattaaagcattataaaaaGTAGTTGGTGGATTCATTAATAACCGGCGAGATACGAGATTTTAATGAAAAGGACGACATAATTAGTGCGAAGtgtgcgGGTGGTTTTAGATGAAAATGGAGCCATATGGCATAATACCGAGTGACAAGGCTGAACAAACCAAATCTACTCGAAGTCGGAGGATCTCATCGatCTTGAAAGCACCTCGAACTCCACTTAAAAGCATCGGAATAGATCATGGTGCACCTCAGGAATGTGCAGCCAAGCCTTTTGAAAAGAAACGCCGAAGTTCTCGACGAGTCAGTTTTGCTGAGACCAATGATATAAAggattttaaaaatgattctCCTGTGACAAAGTTGCTACAGGATCTTGATGGCACAGGCATGGAAACACTGCTCTATGCTCCTCTTCAGGTTCCTCAACAACAGCATGAGgaaaatgtattttatcaacCTGCTATTCAGGGTGCTATGGCTGACAAAACCATTGTGTTTTCTGGGGAGGACCATGAAAATATGGACATGACCTACAGccatactattattattgacaaGGATGAAAATGATGACAAACCTGATGCTTCTAGCCGTGGGAACGTGGATTTCAGGGAGTTCTTGTCTGGATTGGATAAACCCAAGAATTGCGGCAATAATGATTCAAGAAGAGAGGAGTACAACCACTTCAGAAGTTATGACACGAAAGACTTCCCTGCGAGTTTGTCAAAATCAAATGAACCAAGTGATTCCAGAGTTTTTTCCAATGATCCAAAGTCTGTAACACCATTAGTCCAGCAAAATGTTGATTCAACCACAACTGAGAAAGTAAACTTCAGAGATTTTCTCTCAAGACTTAATGCACATGGAGCAGGTGCTGATTTTGGCAACAAAGGTGATGTTTCCAGCAGTGGAAAACCGGATTTCAGGGATTCTAGATTTGATGAGGCAAGTGGACAAGATTGGATGAAAACCTCTGATTTCAAAGATTTCCTTGCAGATCAGTCTGAGTCAAAAGGACAAAGTGGCCCTGAAAGTGTTTCCTGTGACCCAAAATCTGTAACTCTAGCTGCCCATCAAAACCTTCCTTTATCCAGGACTgagaaagtaaatacaaaagATTTTCTTTCCAGACTTCGTGCACTTGAATCAGGAATTGGTAAAGAAAACCAAGTTCCAGAATCAAAAGAGATGGGAGCTAATAAGAATCCTTTTGCGATTGGCACCTATAGCTCTTTTCCTTCACATCATAATGACACATGTAATGTCACACAGATTTTCAGTGGACGTGAAGAAATGGATGTGACACAGTGTCAGACATCCAATATTAGAGTGATAGCATCCACTTTAAACCATGTACCTGCCCGTGGACAGGGCTTGAGTGAGAGATTTCCCAAGCAACCAGACAGCATGGAGATAACCAGAGGACACAGTGTTGTTTTAGATGCTCCTAGTTTGCTGGACACCTCTCACCAAAAGCACTTCACAACACAAGGTTACAGGCATGGTCTCCAGTCTCTTAATAAAACCGTATTATCAGGGGAACAGGACGACATGGACATGACTAAAAGTCACACGGTTTGTATAGATAGCAAGTTTTATGGACACAAGTTTGCTGTACAGCCTGAGGAACAAGATGATATGGAAATAACAAGAAGCCAGACTGTTGCCATTGACTGCAATCATACTGCAGTAGGTAATCCATCCATATTAGTCCATAAAAGGAATCGAAAGAGCCTGGCTGGTTTAGCAGCTTGTGGTGATAAAACGGTTGTTTTTTCAGAGGAACTGGATGCAATGGACATAACGAAGAGTCATACAGTGGCCATTGACAATACCTTTTTTCAGTCTGCTGAGATTCAATCAAATTCACGCAACAATGTGGCTCCTTACCCAGGGTCCTCAAAACTTGATGACATGGACTTGACAAGAAGCCAGACAGTCTCAATAGACTACAAAACTGCAATGTCTAGTAATCCTGCTATGGACTTTAACAGGGGATCTAGAGAAGCATTTGATAAAACTGTTGTGTTTTCAGTAGACCAAAATGATATGGACATAACTAAAAGCCATACTGTGGCTATTGACAGCAGGAGCTTTCTTGACCAGAAGTCTGTTTTGCAGAATGGTGTAGAAATGTCAGGTGTTCCAGTCACCGGAATCCTAAGAAAACCTAGAAAGAGTATGACTGGTTTGTCAGTTAATTCTGATGAAACAGTTGTGATTCCAGGGGACATCGATATGGATATGACTAAAAGCCATACAGTTTCTATTGACAGTAAGCACCTTGTTCCAAAAATGGAAAGACCTGTGATGGTAAATAACTGTATGCCATCGGCACTGCATTCTGTACATGTTGAGCTCAATGATCTAGATATAAAAAAAAGCCAGACCGAGATAATTGACTACAACAATCTTGTTACAATAAATCCAGTATTGGGGACCTGTCAAAAATCTCGGAAAAGTCAGTTTGGTTTGTCAATTCCTTCcgataaaactatatttttttcaatggaGCAGGATGATATGAACATGACTAAGAGCCACACCATTGCCATTGACCACAAGGGACTTTTTGAGCAAAAGTCTCTTTTGCAGAATGAGGAATCAGATGACATGGAAATGACAAGGAGTCAAACCATTGCCATTGACTATAAGAATTTTGTGGCTGCCGATCCATTCATGGGAATCCCAggaaaatatagaaaaagtGTGATTGGTTTGTCTAGTTGTGATGATAAATCGTCTGTCTTCTCTGAGAATATTGCAGAAATGGAAATAACTAAGAGCCAAACAGTGGTTATTGATGGTGCATCTATCTTACAGAATTCCCCAAACCCAGCTGGAGAGGAATCTGGACTGTATATTTTTGACAACATACCAGGTTCCCTTTCTGTGTGTCCTGATCCAGATGACATGGAGATAACAAGAAGCCAGACTGTTAAAATTGACTTGAAAACTGTTGCAGCACATCATTCTGCTGCAGAAATTAACAGGAGTCTTAGACAAAGTGCCTTAGGTTTGTCGGTTCCTGCTGATAGAACAGTTGTCTATTCAGAAAACCTTGATGATATGGACATAACCAAAAGCTACACAGTGGCCATTGACAGCAAGGGACTCGCATACCTGAGTGAAAATACTATGCAGTGCTTAACAAATGGTAATCTGACGATTTCTGAAGGGCCAGATGACATGCACTTGACTAGAAGTCAAACTGATGCCAGCAGTCATTGGCAACAAAACACCAAACCTGTACAAACAATTGCTTTACAATCACCTGTTTCCTCTCATCCTGATGATAAGGAAATGACAAGAGGCCATACAGTTTCTACTGACTACCAAACTAATGCACTGATGACTAGTAAAACCTCTAGAGAAAGTATGGTTGGTTTTTCAGTACCTGATTTGCAAGATGATCTGGAAATAACAAGAAGCCAGACTGTTTTGATTGACAGACAGAGTTGTggttcatttaataattttttccataCTGAAACAGAACTTGTGCCTGGCATTTCCATTCctaataaaaccataattttctCTGAAGATGATAGAATGGAAATGACTAAAAGCCTCACAGTGGCTTTTGATGGTGGAAGCGTTCTAAAAGTTcacaaatgcaaagaaataGCCCTGGAGGAGTCAAATCGTCAGTGTCCTACAAACATCACACTAAATGTGTCTTCAGCTGATTACCATGATGGTACAAGGAGTCAGGCCATCAGAGCTGGTTGTGAGAGTATTAGAGAGAGCATCTCTTGTTCCTCTCTTTTGGAACCTAAAGCTGCTTTAGAAAAGAGTTACGGGCCATGTGACAAAACAGAGTTTGAAGATGCATCgcttacattttgtaaagttaAAGGCATGGATGGTGCACACAGTGTTACCTTTGCCATTGACACTAACGCTACCATTCAGATGAGTAAAGAAAGTCTGTCTTCAGTCAACCAGCAGAAATTAGATTGTATCTTCTTGAATAAACATGGAGAAAGTGAACATGACCAAGATCAGAGACACTctgttgaattaattaaaactgatattGAGATTACATCCACTGACAATCCCAATCCAGAGCTTAGGCGAAAGAGTGTTTGTTTCAAATTGCCAGATCCTAAATCTGGATCTGAGAGAGAAGTGACAATAAATGGGACACATTTAACATCTGAAGATGGTAAAGTGATGGATGAAAGTACCAGAATATCTATGCACAATCCACAGGACTCTGTTGCTGAAATTGATGAAATGACcatcagaagaagaagaagcctTGCAGACCTGCGatcaaaaattaaaaccatCAAAAATGCTATCAATGAACCTGCAGAGACTGGAGTTGCACATCAAACAGCACCTTCACCTAAATTGCAAAGACTCTCGGAACttgaaatgaaagatgaaaacaCTCAAGATTTTTTCGGTAGCAAGGGTTGTGTTAATGATGACGGTAGGGTTTATAATGGTGGAGAAGTTAATGTAGAAGAATCTGCAGGGCCCAATACTCTGCACAGTGTAGACCACTCCCTTTATGGAGATCAGGCCTGGAACACGACCGCACCTGTTAACATCTGTAGTGTCAAGCCTAAAACAACACGGATGTCTCTTGGTGGTTATCTACCCAAGCTTCcacataaaaagaaaaccattgaAGTTAAGCCCCctgaaattacagaaaacagTAGTTTTGGGAAATTATTAGTGAGAGCTCTTGGGGCCAGTGCTGAAACTCAGATGAGAAACAATGAGACAGACCACAATATTCATGAAGAAATACTTCCTGACTGCAGTGATGAAGAGGATTCTGCAGAAAACATAACCGGCGAGTTACCACCCGGAAACTGCCTGAACAATACTTCTGATGAAAGAGCTCTGAGCAATATAGGTATAGACGACCCAGACTTTGTCAAGTCAATGCTGGATGTGACGGCAAGCCAGAAAAGACCTTTTCCAGAAGGGGGCCATGAGGATGAAATCACAAATGAGAGAAAAGTCAGAAGAAGTCTTGATGGTCCTTCTGCCGACCAAGGAAAGGAAGCATCAAAGTTTATCGTCCAGTGGGACAGTAATGCTGTTGGCATCACAGCAGAAAGCTTACCAAGCTTAACAACCAAGACCTTTGACAGCACCAGCTCCAGCAGTAACACCATCAACACCACCAACCTCAAAGGGACCTATGATACAAGTGCTCAGAGATCAGCTCAGTTTGAGTCCCAGTTCATGGAAGAAGAGGAATTTGAGTGTGGTTTGCGAGAGAAACTACAAGATGGCAGCATCACAATTAAAGAATTTTTTCAACTTCTTGAGATCAACATCCTCATCCAGAGACCCAGGCAGAGCACACTGCCTCACAATTTTGCATCTGATTCAGCCCTTGACCCGGAGGTTCTCCTAAGAGAGAGGTTTATTTACCGACCCAAACAGCAGGTTTACGAGGAGGACTGTCAAGCGCTGTCAGAGACAGTCGAAATattaaagGCACGAATCCCTGACCAGGAAAAAGCTTTGAAGACTATCAATGAATCCCTTTGGGAAACTGTGAAAACCTATTCAGAAGAACAgCTGAAGAGTCTTGGGTCTAAgctgaatgaaagaaaattatatttcagaaagaaGAGTAAAGCGTTCTTTCATGAAACAAAGATCGGCTTGTATTCCAAATTGGTGCAGTCTGCAAAGCTGGCAAAACAGGATTTGAAAGAGAAGATTGAATTGACTGAAGATTTGCTGCAAAACCTGGATGACTGTCTCCACAATCTAGAAGCAGAGTGGACACTTATTGAATGGACAGATGACCGGGCAGTTTTCTCCTTTTTGAATGGCTCTCTTGAAATTGAACTTGTATTTGATGCCCCTTGTGAGGGAACAGACAAACCTGGGCAGAATGTTCTGGATGTCAAGTTTTACACACTGTTGGATGATGAAAGAGTACCTTCTTCTAGCCTTGTGATTCACAAGCTGATAACCCAGTTCATTAAAAGCCATGGCAGCTGGTGCCAAAAATACCCAAAACAGCAAGATCTGCTTCACGATTTGTCTCTTGTGGTCAGTCGTTGTCGGCTCCTTGGGGAAGAACTCCATTACCTGGACAAGTGGGGCTGTCTCAAGTTCGATATCCTGGACATGAGTGTGTCAGACACTAATTATAAAGCATTTGCCAAGTTTGACATCGCATTCGCAATCACTCCAGCTTACCCTTCGTCCCGGCTAGAGCTGCTGAGCTTCCAGAATTACATTGGAGATATAAGgcGTGACCAGATAGAGGATTCAATATCTGCAGTTAAACCTGAAGAGCACTACCTTACCAAGATTATTCAAAAGATCCAACAAGATCTACTCTGCAAGAAGCAATGAACAGTGCCGTAtcagttttgtaaatatttttgttttttaactgcatttcctttaaaaaaaaaaaaaaaactttgccttttaaaaataattgtgcttATTGTTCAGCATTCATTCTGAAGACTAGctgttgaataaaaaatatatttt

Function

GO: NA

KEGG:

id description
K11542 CASC5, KNL1; protein CASC5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187002 lncRNA downstream 112334 6147929 ~ 6148286 (-) True G148610
TU186961 lncRNA downstream 247983 6004186 ~ 6012637 (-) False AMCG00000180
TU186962 lncRNA downstream 247983 6004186 ~ 6012637 (-) True AMCG00000180
TU186854 lncRNA downstream 548744 5711019 ~ 5711876 (-) True G148486
TU186776 lncRNA downstream 805131 5455246 ~ 5455489 (-) True G148417
TU187110 lncRNA upstream 277161 6556705 ~ 6563305 (-) False G148692
TU187113 lncRNA upstream 278298 6557842 ~ 6563305 (-) True G148692
TU187241 lncRNA upstream 860818 7140362 ~ 7140968 (-) True G148801
TU187436 lncRNA upstream 1479138 7758682 ~ 7758963 (-) True G148962
TU187485 lncRNA upstream 1676428 7955972 ~ 7956264 (-) True G149002
AMCG00000188 mRNA downstream 2420 6244719 ~ 6258200 (-) True AMCG00000188
AMCG00000190 mRNA downstream 44558 6214005 ~ 6216062 (-) True AMCG00000190
AMCG00000189 mRNA downstream 51043 6207514 ~ 6209577 (-) True AMCG00000189
AMCG00000168 mRNA downstream 106319 6150723 ~ 6154301 (-) True AMCG00000168
AMCG00000169 mRNA downstream 134260 6125794 ~ 6126360 (-) True AMCG00000169
AMCG00000191 mRNA upstream 5465 6285009 ~ 6288346 (-) True AMCG00000191
AMCG00000182 mRNA upstream 195897 6475441 ~ 6480300 (-) True AMCG00000182
AMCG00000184 mRNA upstream 241483 6521027 ~ 6552330 (-) True AMCG00000184
AMCG00000205 mRNA upstream 319580 6599124 ~ 6624326 (-) True AMCG00000205
AMCG00000207 mRNA upstream 359035 6638579 ~ 6659202 (-) True AMCG00000207
TU187026 other downstream 44179 6215756 ~ 6216441 (-) False AMCG00000190
TU187023 other downstream 50663 6209274 ~ 6209957 (-) False AMCG00000189
TU187005 other downstream 106354 6150720 ~ 6154266 (-) False AMCG00000168
TU186991 other downstream 193436 6061322 ~ 6067184 (-) False AMCG00000177
TU186746 other downstream 918129 5338809 ~ 5342491 (-) True G148395
TU187117 other upstream 278298 6557842 ~ 6563305 (-) False G148692
TU187112 other upstream 279282 6558826 ~ 6563305 (-) False G148692
TU187302 other upstream 1081678 7361222 ~ 7362692 (-) True G148851
TU187495 other upstream 1816421 8095965 ~ 8106839 (-) True G149011
TU187735 other upstream 2756013 9035557 ~ 9045855 (-) False AMCG00000260

Expression Profile