RNA id: AMCG00000188


Basic Information

Item Value
RNA id AMCG00000188
length 1857
RNA type mRNA
GC content 0.45
exon number 10
gene id AMCG00000188
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 6244719 ~ 6258200 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGAAGGTGAGTTGAGCCTGCGcctttaagaaagaaaagacgTCACGTCATCACGTAAGTACGTCACCACGTAAGGTCGCTTGTTGGCGAGCGGGAATTTCAGACATTGAAAGCAACGGGAGAAAGAGATCCATCCACCAAAATGGCAATGAGGAGTGACGTCACAGTGGAGGCAGAAGTGGAGGAGGAGAACTTCGGGCCGCAGCCCTTAAGCAGACTGGAGAAGTTGGAGGATGCGGGTTTCCACACGGTGGAGGCAGTTGCCTACGCGCCCAAGAAAGAGTTGCTGAACATTAAAGGAATCAGCGAAGCTAAAGCTGAAAAACTGCTGGCAGAAGCTGCAAAGCAGGTGCCAATGGGATTTACTACAGCTACAGAATTTCATCAGCGAAGAGCCGAAATTATCCAGATATCCACGGGGTCCAAAGAGCTCGACAAACTGCTACAAGGGGGAATAGAAACTGGCTCCATCACAGAGATGTTTGGGGAATTTCGAACAGGAAAGACACAGCTTTGCCACACTCTAGCAGTAACTTGTCAGTTGCCAATTGACCAAGGTGGCGGAGAGGGAAAAGCCATGTACATCGACACGGAAGGGACTTTCCGTCCGGAGAGGCTGCTAGCTGTTGCAGAAAGGTATGGATTGGTCGGAAGTGATGTCCTTGACAATGTAGCCTATGCCAGAGCCTTCAATACAGACCACCAAACCCAGCTGTTGTACCAAGCCTCTGCAATGATGGCAGAATCAAGgtATGCTTTGCTAATCGTGGACAGTGCTACAGCGCTCTACAGGACAGATTATTCTGGCAGAGGGGAGCTGTCTGCCAGACAGGGGCACCTGGGAAGGTTTCTTCGTATGTTGTTGCGGCTGGCAGATGAGTTTGGTGTTGCTGTGGTGATCTCCAACCAGGTAGTAGCCCAGGTGGATGGAGCTGCCATGTTTTCTGCAGATCCAAAGAAGCCCATTGGAGGAAACATCATCGCCCATGCTTCAACCACAAGACTGTACTTAAGAAAAGGCCGCGGCGAGACTCGGATATGCAAGATTTACGACTCTCCCTGCCTCCCAGAGGCCGAGGCAATGTTTGCCATCAACGCAGACGGAGTTGGGGATGCAAAGGACTGAGGAGTCAGGCATGTTCCTCTTCATTGCATAAAGGACACAACAACCTTACCACTTCCATTGCTCACTTGCACACTTCTCTTGTGTTCTGTGTACACCTTTTTTATGTATAGAATTTAAAATGGTAGTTCCAGCATCCCAATCTTGAACAAAGTTCCCATATGGTGACATTCAAGcttccaaaaaagaaacaatttttACACTTTGGTGCAAAATTGTAATGTTGCTTTACACTCTTAGAGGCAgtactgttctgttttttagaGGACAGTGATTGATTTGTTGGAAAATAACCTTTAATTGGTTTTGCAAAAACAACTTCCCTGCATTGTTCATGTTGGATTGGCTACTTGAACACAGATCTATTTTCTCCTTTGAGCAGTGCAAGtgcatctgtttttgtttgtatttcttgtgGGTGTTgtgatgtacagtttttttttttttttgtcccttttTGTCTATCCTTACCTTCCATAATTTCCTTCTGTATATAAGATGTACCctattaaatttattttaaaacccttGGATGTGGGGTTTTGGTATTTTGTTCATCAATAAAATCATGAATGCCAGGCAATGTGGCATCACTCCATATCTTCTATGGCAACCTATAAGGTCATTTTCTGTGGTTTTCTTAAGATTGTAGGTGGTGCTTTTGAAGGgagtgtgcttttttttttaacctgctTTAGATCATCCAGATGCTTCCAGAGTGATGTGCAGAAAAG

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006281 DNA repair biological_process
GO:0005524 ATP binding molecular_function
GO:0003684 damaged DNA binding molecular_function
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
K04482 RAD51; DNA repair protein RAD51

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187002 lncRNA downstream 96433 6147929 ~ 6148286 (-) True G148610
TU186961 lncRNA downstream 232082 6004186 ~ 6012637 (-) False AMCG00000180
TU186962 lncRNA downstream 232082 6004186 ~ 6012637 (-) True AMCG00000180
TU186854 lncRNA downstream 532843 5711019 ~ 5711876 (-) True G148486
TU186776 lncRNA downstream 789230 5455246 ~ 5455489 (-) True G148417
TU187110 lncRNA upstream 298505 6556705 ~ 6563305 (-) False G148692
TU187113 lncRNA upstream 299642 6557842 ~ 6563305 (-) True G148692
TU187241 lncRNA upstream 882162 7140362 ~ 7140968 (-) True G148801
TU187436 lncRNA upstream 1500482 7758682 ~ 7758963 (-) True G148962
TU187485 lncRNA upstream 1697772 7955972 ~ 7956264 (-) True G149002
AMCG00000190 mRNA downstream 28657 6214005 ~ 6216062 (-) True AMCG00000190
AMCG00000189 mRNA downstream 35142 6207514 ~ 6209577 (-) True AMCG00000189
AMCG00000168 mRNA downstream 90418 6150723 ~ 6154301 (-) True AMCG00000168
AMCG00000169 mRNA downstream 118359 6125794 ~ 6126360 (-) True AMCG00000169
AMCG00000179 mRNA downstream 174887 6067655 ~ 6069832 (-) True AMCG00000179
AMCG00000187 mRNA upstream 2420 6260620 ~ 6279544 (-) True AMCG00000187
AMCG00000191 mRNA upstream 26809 6285009 ~ 6288346 (-) True AMCG00000191
AMCG00000182 mRNA upstream 217241 6475441 ~ 6480300 (-) True AMCG00000182
AMCG00000184 mRNA upstream 262827 6521027 ~ 6552330 (-) True AMCG00000184
AMCG00000205 mRNA upstream 340924 6599124 ~ 6624326 (-) True AMCG00000205
TU187026 other downstream 28278 6215756 ~ 6216441 (-) False AMCG00000190
TU187023 other downstream 34762 6209274 ~ 6209957 (-) False AMCG00000189
TU187005 other downstream 90453 6150720 ~ 6154266 (-) False AMCG00000168
TU186991 other downstream 177535 6061322 ~ 6067184 (-) False AMCG00000177
TU186746 other downstream 902228 5338809 ~ 5342491 (-) True G148395
TU187117 other upstream 299642 6557842 ~ 6563305 (-) False G148692
TU187112 other upstream 300626 6558826 ~ 6563305 (-) False G148692
TU187302 other upstream 1103022 7361222 ~ 7362692 (-) True G148851
TU187495 other upstream 1837765 8095965 ~ 8106839 (-) True G149011
TU187735 other upstream 2777357 9035557 ~ 9045855 (-) False AMCG00000260

Expression Profile