RNA id: TU187023


Basic Information

Item Value
RNA id TU187023
length 512
RNA type TUCP
GC content 0.45
exon number 2
gene id AMCG00000189
representative False

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 6207514 ~ 6209957 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTCGACTCTTAGGAATGAGAAAGGAATGAAACACTGCTGACTCGATCCGATGCGTCCCACACAAAACAGACAGTGAGGAAAAGATTAGATTTGAGGAACACGGAAGAAGAGCTTAAATTGTTCACCAGTGAAAACGGCTTTGCTTTATTGATACAACTCAATGATATCTGCATTAAACAAAGAAGAACATACAGCTTATCCATCAGAATGGCAATGTGGGACAATGAATTTGGAGTGAAGGGCAGCATTATGAGAGACTGGAGTGAACAGGTGCAAGTGGCACTTATTGTTTGCTTCACATTCCTTTTTTGTATAGAAGCCTGTCTCTGGGTGAAGAGTTTCAGACACAAGAGACGCCTGCCTGGCCCCTTTGCCTGGCCAGTGGTGGGCAATGCCATGCAGCTGGGACAAATGCCCCATCTATCCTTCTCTAGGCTGGCGAAGAAGTATGGCAACATCTTCCAGATCAAATTGGGCTGCAATGACATTGTGGTTCTCAATGGAGAGACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187002 lncRNA downstream 60988 6147929 ~ 6148286 (-) True G148610
TU186961 lncRNA downstream 196637 6004186 ~ 6012637 (-) False AMCG00000180
TU186962 lncRNA downstream 196637 6004186 ~ 6012637 (-) True AMCG00000180
TU186854 lncRNA downstream 497398 5711019 ~ 5711876 (-) True G148486
TU186776 lncRNA downstream 753785 5455246 ~ 5455489 (-) True G148417
TU187110 lncRNA upstream 346748 6556705 ~ 6563305 (-) False G148692
TU187113 lncRNA upstream 347885 6557842 ~ 6563305 (-) True G148692
TU187241 lncRNA upstream 930405 7140362 ~ 7140968 (-) True G148801
TU187436 lncRNA upstream 1548725 7758682 ~ 7758963 (-) True G148962
TU187485 lncRNA upstream 1746015 7955972 ~ 7956264 (-) True G149002
AMCG00000168 mRNA downstream 54973 6150723 ~ 6154301 (-) True AMCG00000168
AMCG00000169 mRNA downstream 82914 6125794 ~ 6126360 (-) True AMCG00000169
AMCG00000179 mRNA downstream 139442 6067655 ~ 6069832 (-) True AMCG00000179
AMCG00000177 mRNA downstream 142101 6045665 ~ 6067173 (-) True AMCG00000177
AMCG00000176 mRNA downstream 179478 6017546 ~ 6029796 (-) True AMCG00000176
AMCG00000190 mRNA upstream 4048 6214005 ~ 6216062 (-) True AMCG00000190
AMCG00000188 mRNA upstream 34762 6244719 ~ 6258200 (-) True AMCG00000188
AMCG00000187 mRNA upstream 50663 6260620 ~ 6279544 (-) True AMCG00000187
AMCG00000191 mRNA upstream 75052 6285009 ~ 6288346 (-) True AMCG00000191
AMCG00000182 mRNA upstream 265484 6475441 ~ 6480300 (-) True AMCG00000182
TU187005 other downstream 55008 6150720 ~ 6154266 (-) False AMCG00000168
TU186991 other downstream 142090 6061322 ~ 6067184 (-) False AMCG00000177
TU186746 other downstream 866783 5338809 ~ 5342491 (-) True G148395
TU185384 other downstream 5723691 484720 ~ 485583 (-) True G147324
TU185352 other downstream 5816792 387118 ~ 392482 (-) True AMCG00000037
TU187026 other upstream 5799 6215756 ~ 6216441 (-) False AMCG00000190
TU187117 other upstream 347885 6557842 ~ 6563305 (-) False G148692
TU187112 other upstream 348869 6558826 ~ 6563305 (-) False G148692
TU187302 other upstream 1151265 7361222 ~ 7362692 (-) True G148851
TU187495 other upstream 1886008 8095965 ~ 8106839 (-) True G149011

Expression Profile