RNA id: AMCG00000190


Basic Information

Item Value
RNA id AMCG00000190
length 1011
RNA type mRNA
GC content 0.51
exon number 2
gene id AMCG00000190
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 6214005 ~ 6216441 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGCTGTGGGACACAGAGTTTGAAGTGAAGGACAGTAGCTCGATTAGAGAATGGAGTGGACAGGTCCAGCCAGCTCTCATCGCTTCCCTCGTGCTGCTATTCTGTTTGGAAGCCTTTCTGTGGGTGAGAAATATGAGGCAAAAGAGACGCCTGCCTGGCCCCTTTGCCTGGCCACTGGTAGGCAATGTGATGCAGCTGGGACAAATGCCCCATATAACTTTTTCCAGGCTGGCCAAGAAGTATGGCAATGTCTTCCAGATCAAATTGGGCTGCAATGACATTGTAACGCGAGACATGAGTGATGCCTTCATCGGTATCATAGAACATGGAAGTGGCAGCAAGAAGGGACTTACCAAAGAGCATGTTGAGGGAACTGTCACAGATCTCATGGGTGCTGGGCAAGACACCATTTCAACAGCTATGCAGTGGATCCTCCTTCTTTTGGTAAAATACCCCAACATCCAAACTAAACTGCAAGAGCAGATTGACAAAGTCGTGGGAAGAGACAGGCTTCCCACCATCGAGGACAAGGGCAGTCTGGCCTACCTGGAAGCCTTCATCTACGAGACCATGCGCTTCACCAGCTTTGTACCAGTGACGATCCCCCACTCCACCACCTCTGACGTGACAATCGACGGCCTCCACATCCCCAAGGACACTGTGGTCTTCGTGAACCAGTGGTCTGTCAATCACGACGAGAAGAAGTGGAAGGATCCTCACGTCTTTGACCCCTCGCGCTTCCTGGATGAGGATGGCATGATAGACAGGGATCTGACCAGCAGTGTGATGATCTTCTCTATCGGGAAGAGGAGATGCATCGGTGACCAGATCGCTAAGGTCCAGATATTTCTGTTCACGGCCATCCTAATCCACCAATGCAGCTTTGAGAGCAACCCTTCTGAAAACCTCACTATGGACTGTTCTTATGGCTTGGCATTGAAGCCCCTCCACTTCACTCTATCTGCCAAGCTCAGGGGGAAGCCTTTAGGCCCGATCTCAACAGCATAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187002 lncRNA downstream 65719 6147929 ~ 6148286 (-) True G148610
TU186961 lncRNA downstream 201368 6004186 ~ 6012637 (-) False AMCG00000180
TU186962 lncRNA downstream 201368 6004186 ~ 6012637 (-) True AMCG00000180
TU186854 lncRNA downstream 502129 5711019 ~ 5711876 (-) True G148486
TU186776 lncRNA downstream 758516 5455246 ~ 5455489 (-) True G148417
TU187110 lncRNA upstream 340643 6556705 ~ 6563305 (-) False G148692
TU187113 lncRNA upstream 341780 6557842 ~ 6563305 (-) True G148692
TU187241 lncRNA upstream 924300 7140362 ~ 7140968 (-) True G148801
TU187436 lncRNA upstream 1542620 7758682 ~ 7758963 (-) True G148962
TU187485 lncRNA upstream 1739910 7955972 ~ 7956264 (-) True G149002
AMCG00000189 mRNA downstream 4428 6207514 ~ 6209577 (-) True AMCG00000189
AMCG00000168 mRNA downstream 59704 6150723 ~ 6154301 (-) True AMCG00000168
AMCG00000169 mRNA downstream 87645 6125794 ~ 6126360 (-) True AMCG00000169
AMCG00000179 mRNA downstream 144173 6067655 ~ 6069832 (-) True AMCG00000179
AMCG00000177 mRNA downstream 146832 6045665 ~ 6067173 (-) True AMCG00000177
AMCG00000188 mRNA upstream 28657 6244719 ~ 6258200 (-) True AMCG00000188
AMCG00000187 mRNA upstream 44558 6260620 ~ 6279544 (-) True AMCG00000187
AMCG00000191 mRNA upstream 68947 6285009 ~ 6288346 (-) True AMCG00000191
AMCG00000182 mRNA upstream 259379 6475441 ~ 6480300 (-) True AMCG00000182
AMCG00000184 mRNA upstream 304965 6521027 ~ 6552330 (-) True AMCG00000184
TU187023 other downstream 4048 6209274 ~ 6209957 (-) False AMCG00000189
TU187005 other downstream 59739 6150720 ~ 6154266 (-) False AMCG00000168
TU186991 other downstream 146821 6061322 ~ 6067184 (-) False AMCG00000177
TU186746 other downstream 871514 5338809 ~ 5342491 (-) True G148395
TU185384 other downstream 5728422 484720 ~ 485583 (-) True G147324
TU187117 other upstream 341780 6557842 ~ 6563305 (-) False G148692
TU187112 other upstream 342764 6558826 ~ 6563305 (-) False G148692
TU187302 other upstream 1145160 7361222 ~ 7362692 (-) True G148851
TU187495 other upstream 1879903 8095965 ~ 8106839 (-) True G149011
TU187735 other upstream 2819495 9035557 ~ 9045855 (-) False AMCG00000260

Expression Profile