RNA id: TU187026


Basic Information

Item Value
RNA id TU187026
length 686
RNA type TUCP
GC content 0.41
exon number 1
gene id AMCG00000190
representative False

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 6214005 ~ 6216441 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaggagaaaaaaaaaatacccaagGAGGTCTTCTACACCTAATGAAACGTTAATGAATTAAGAAGGAAGGTGGTAGTCGTCTTGAAAAGTGGACTGGATTCTAAATCACAATTTAACAGATCATTGGTTTTACAAGGATATTCTGtgaaattgaaaaaacacaGGTTTCCAAAACTAAAACAGGTCATTTTAAAACTTGATATTGGGATATTGGTGCacctatatttttatttctaatatttcagtgaaaacttcagtgaaaagtgaaaagatTTGAAGAGTTGGACTGTTGGACTGCATCTTTTTAGACAACCTGTAGGTCTTCAAACAGCTTGCGACTTCCAAAGCATTAGCATCATCTATTGCTTAGCCAATCACAATGACGCTGTGGGACACAGAGTTTGAAGTGAAGGACAGTAGCTCGATTAGAGAATGGAGTGGACAGGTCCAGCCAGCTCTCATCGCTTCCCTCGTGCTGCTATTCTGTTTGGAAGCCTTTCTGTGGGTGAGAAATATGAGGCAAAAGAGACGCCTGCCTGGCCCCTTTGCCTGGCCACTGGTAGGCAATGTGATGCAGCTGGGACAAATGCCCCATATAACTTTTTCCAGGCTGGCCAAGAAGTATGGCAATGTCTTCCAGATCAAATTGGGCTGCAATGACATTGTGGTTCTCAATGGAGAGACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187002 lncRNA downstream 67470 6147929 ~ 6148286 (-) True G148610
TU186961 lncRNA downstream 203119 6004186 ~ 6012637 (-) False AMCG00000180
TU186962 lncRNA downstream 203119 6004186 ~ 6012637 (-) True AMCG00000180
TU186854 lncRNA downstream 503880 5711019 ~ 5711876 (-) True G148486
TU186776 lncRNA downstream 760267 5455246 ~ 5455489 (-) True G148417
TU187110 lncRNA upstream 340264 6556705 ~ 6563305 (-) False G148692
TU187113 lncRNA upstream 341401 6557842 ~ 6563305 (-) True G148692
TU187241 lncRNA upstream 923921 7140362 ~ 7140968 (-) True G148801
TU187436 lncRNA upstream 1542241 7758682 ~ 7758963 (-) True G148962
TU187485 lncRNA upstream 1739531 7955972 ~ 7956264 (-) True G149002
AMCG00000189 mRNA downstream 6179 6207514 ~ 6209577 (-) True AMCG00000189
AMCG00000168 mRNA downstream 61455 6150723 ~ 6154301 (-) True AMCG00000168
AMCG00000169 mRNA downstream 89396 6125794 ~ 6126360 (-) True AMCG00000169
AMCG00000179 mRNA downstream 145924 6067655 ~ 6069832 (-) True AMCG00000179
AMCG00000177 mRNA downstream 148583 6045665 ~ 6067173 (-) True AMCG00000177
AMCG00000188 mRNA upstream 28278 6244719 ~ 6258200 (-) True AMCG00000188
AMCG00000187 mRNA upstream 44179 6260620 ~ 6279544 (-) True AMCG00000187
AMCG00000191 mRNA upstream 68568 6285009 ~ 6288346 (-) True AMCG00000191
AMCG00000182 mRNA upstream 259000 6475441 ~ 6480300 (-) True AMCG00000182
AMCG00000184 mRNA upstream 304586 6521027 ~ 6552330 (-) True AMCG00000184
TU187023 other downstream 5799 6209274 ~ 6209957 (-) False AMCG00000189
TU187005 other downstream 61490 6150720 ~ 6154266 (-) False AMCG00000168
TU186991 other downstream 148572 6061322 ~ 6067184 (-) False AMCG00000177
TU186746 other downstream 873265 5338809 ~ 5342491 (-) True G148395
TU185384 other downstream 5730173 484720 ~ 485583 (-) True G147324
TU187117 other upstream 341401 6557842 ~ 6563305 (-) False G148692
TU187112 other upstream 342385 6558826 ~ 6563305 (-) False G148692
TU187302 other upstream 1144781 7361222 ~ 7362692 (-) True G148851
TU187495 other upstream 1879524 8095965 ~ 8106839 (-) True G149011
TU187735 other upstream 2819116 9035557 ~ 9045855 (-) False AMCG00000260

Expression Profile