RNA id: AMCG00000191


Basic Information

Item Value
RNA id AMCG00000191
length 489
RNA type mRNA
GC content 0.41
exon number 3
gene id AMCG00000191
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 6285009 ~ 6288346 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTAGAGGCAACGTGAGTAGTGCAGATCTGCAATCCCTCACATATATCTCCTATGTTGGCTGTGGCTTTTCAATCTTTTTCTTGGGTGTGGGATTGTTCATGCATTTCATGTTGAGGAGAGCAAAATCCAGTCATGCTACGAAGATCCTCATCAATCTTTTTGTGGCCCTGTTCCTGCTGAATCTCACGTTTCTCCTGAATGAGTGCTGGATCACAGACCCAGTAGTTCATTACATCACCAACCTTGGCTACTATGCAGCAGTGTTTCTCTTCAATAtaatcatttttgttattgtggttAAGCAGttgattcaaatgaaaaaaaataaagtatatggATCCAAGCCAGACAGCCTAAAGAAGAATGCATATACCATTATGGGTCTGTGTATGTTGCTGGGAATTACCTGGGGTATTGCTTTCTTTGACTTTGGGCCTCTTCAGGTGTCATCACTTTATGCTTTCACCATCTGCAATTCAGCACAAGGC

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187002 lncRNA downstream 136723 6147929 ~ 6148286 (-) True G148610
TU186961 lncRNA downstream 272372 6004186 ~ 6012637 (-) False AMCG00000180
TU186962 lncRNA downstream 272372 6004186 ~ 6012637 (-) True AMCG00000180
TU186854 lncRNA downstream 573133 5711019 ~ 5711876 (-) True G148486
TU186776 lncRNA downstream 829520 5455246 ~ 5455489 (-) True G148417
TU187110 lncRNA upstream 268359 6556705 ~ 6563305 (-) False G148692
TU187113 lncRNA upstream 269496 6557842 ~ 6563305 (-) True G148692
TU187241 lncRNA upstream 852016 7140362 ~ 7140968 (-) True G148801
TU187436 lncRNA upstream 1470336 7758682 ~ 7758963 (-) True G148962
TU187485 lncRNA upstream 1667626 7955972 ~ 7956264 (-) True G149002
AMCG00000187 mRNA downstream 5465 6260620 ~ 6279544 (-) True AMCG00000187
AMCG00000188 mRNA downstream 26809 6244719 ~ 6258200 (-) True AMCG00000188
AMCG00000190 mRNA downstream 68947 6214005 ~ 6216062 (-) True AMCG00000190
AMCG00000189 mRNA downstream 75432 6207514 ~ 6209577 (-) True AMCG00000189
AMCG00000168 mRNA downstream 130708 6150723 ~ 6154301 (-) True AMCG00000168
AMCG00000182 mRNA upstream 187095 6475441 ~ 6480300 (-) True AMCG00000182
AMCG00000184 mRNA upstream 232681 6521027 ~ 6552330 (-) True AMCG00000184
AMCG00000205 mRNA upstream 310778 6599124 ~ 6624326 (-) True AMCG00000205
AMCG00000207 mRNA upstream 350233 6638579 ~ 6659202 (-) True AMCG00000207
AMCG00000206 mRNA upstream 381867 6670213 ~ 6671949 (-) True AMCG00000206
TU187026 other downstream 68568 6215756 ~ 6216441 (-) False AMCG00000190
TU187023 other downstream 75052 6209274 ~ 6209957 (-) False AMCG00000189
TU187005 other downstream 130743 6150720 ~ 6154266 (-) False AMCG00000168
TU186991 other downstream 217825 6061322 ~ 6067184 (-) False AMCG00000177
TU186746 other downstream 942518 5338809 ~ 5342491 (-) True G148395
TU187117 other upstream 269496 6557842 ~ 6563305 (-) False G148692
TU187112 other upstream 270480 6558826 ~ 6563305 (-) False G148692
TU187302 other upstream 1072876 7361222 ~ 7362692 (-) True G148851
TU187495 other upstream 1807619 8095965 ~ 8106839 (-) True G149011
TU187735 other upstream 2747211 9035557 ~ 9045855 (-) False AMCG00000260

Expression Profile