RNA id: AMCG00000192



Basic Information


Item Value
RNA id AMCG00000192
length 4079
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00000192
representative True

Chromosome Information


Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 6916674 ~ 6921676 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTGCCATAAAACTTCGATTTTTTAAAAGTCTTCATAAATTCTATATGCAATGAATTGCAAACCAGTGaaatgatattttattttcctcacttATAGTTACAAGAGGAGTTTAATCATGTTAGAAATGTATTGTTACATTGTGTATTCTTCCAGCTTTAACccctgatgtgtgctttggattTTCAGGTAATGCCCGGTTAAAGTGCAGGGCTAATTAATGCACAATACTGCGTTAAAGACTATTTACTGTTGGACTCTGAGTTTCTGATAGCCAAGTTGGATAGCAGTGTTTTTTCCTGTCACGCAGGCAGCAGTCAAAGTACAGTACATTGTTTGGGGCAAGAGTTTCGTTACAGATTTGTTCAGCCTGTTTAATCGGTGACTCTCACACTCTTTAGGAGAAGCAGGAGAgGAGGTGTTACAATGTTGGGAAGCATGAACAGCAGAGACAGATGCTTCTGGGCTCTGTTTGGGTCGCTGCACTGTGTGCTGGTGGCTGCGGTGAACCCGCCTCCTgctgaaaatatacacattctTCGGCCAGATGAgtacaaattagttttaaacCCGGAACAAGAAGGCTACCCCAGCGACTGTTACAAGATCTGGCAGAGCTCGGAAGGCCAGGCCAGGGACGGCGTGTACATGATCCAGCTCAAGACCTCGCCCATCGTGGTGTTCTGTGACATGCAGGGCGGCGGCTGGACGGTGGTGCAACACATCACGGTCAACAGCACCGTGGACTTCGACCGGACCTGGCAGGACTACAAGCTGGGATTCGGCTCGGTCAACGGCGACCACTGGCTGGGCAACGAGTACCTGCACCAGCTCACCAACCAACCGGGACGCTACCAGCTCAGGGTCAAGCTGGTGGACAAGGACGCCATCACCAAGGTTGGCCAGTACGATCCAGTCCGGGTGGAGAGCGAGGAATTCCAATTCAAGATCCGTCTGGGTTTGTTCGAGGGGACGGCGGTGGACGCTTTGACTCAGGACACGGAGGCCTACCTGCACGACAACCAGAAGTTCACCACCAAGGACAGAGACAACGATAACTACTTCCAGAACTGCGCCAAGCTGGAATATCTCGGGGTACCCGGAGGGGGCTGGTGGTACGATGCCTGTGCAGGCGCCAACCTCAACCGAAGGAACGTCATCTACTGGCAGAAAGACTGCAACAAGGAACACATCTGCAAGTACGCGTGGATGATGGTGAAGCCCTCGGACGCTGTGACGATCAGCAGGACTGGAAACTGTCAACGGGATGAACTGTAATTAGACTCATCTGTATAACCTTTGCAAAGGTCCTTCTCTGCCTTCTTTTTCATGCCAGCGTTCACAACaggtttgaatgtttttgtgtgtgtttgttttcttaattgattGAAAATATCTGTTTGTTATCTACTCCGGCACAGAGGTCTACAGTGGTTACTGCATTCGCCTTCTGGTCAGACTATTGTTTGGAGAGTGAGAAACCACTCGGGATGACGgaggaaagaaaagacagatgcaGCAGCAAAGGATTTTGGTCAAATCAGTCACACAATCATTtcaaggaaataaataacagacagaccaaaagggaaaaaaacattgtgtgtgcatctgtgctgTACTGATAACCAATTAGACTAATTATTCCCAGCAATTTACATTGACAGATTTTAACCTATCAATTTATGACAATATCTCTTgtctcttttattattatacaccaaaacacacacaggttatCCTTGTAATACAACAACTACCCCTAATCATGTCTTTAGCATTGCAGAGGTTTTGGCTACAGgccttgctttttaaatattttttaaataactaattaacATAGTCAATccttgtcaaataaataaatgatcatttACAAACCAAATTTCAAACCAAAGATCTATTCTATCACCAACATGTAAGATCTTGAAACAAGCATTTataatgatgtattttgttGGTAAGTCTGAGGTACATAAGAATACAATGACATTAAGTACAACAAAGAAACTGCTAAGATGATATGCCTAGCTACAGTACAATACAACTGAGAAGAATATAAGtgctttcatatatttttttgtatttcccaTTTGTTTCCAAGTTAGCTGTAAAACTGTTAACACGTTTAAGTCTTTGTGACTgataaattgattatttaattcattcattctttgTGTGTCTATATGAAAAATCACAatcatgtttagttttttaaaacgtatttatttgtacttttcctGAATAATGAGCCCGAAGCACACACACCGATATTCTGTTTAAAGCAATTGATACTCCAGCTGCAGCACTGCAGGAATGAGGCGCAGTGACACACAGAGATTGTACATCCTAACACTGACAAACTGTGAGGCTTTGCtttgaaaatatcaattttaaCAACAAGAGAATAGGACATGATCTTCTGCACACACATGTAACGCAATTAAAACcagcttgttttctttcatgttttagtCTGCTTTttatgatgaaaaacaaacatgtaagaAAGAACCAACAGAAAACgaatattttgaaaaccaaatGGAACAAATTTCGACAAAAGTcactcaataaaaaaataaaaaaatcacaaatgagCATTGCAAAACATCATACCTCTTCTTTACTATTGAATGGAAAAGAGGACGGTCTGACCAGCAGTCTCTGGAACTAATCTACAGCATCCTGCAGTTTTTTAATAGCACCTCAGGCTGATTGAACCAGGTATCTATTCCATCTGCACAATCCAACAAGAAAGTGAGAACTGATGAAAGCGGAGGCCCTCGTTAGCTGTTATGCTTTTGTACACATGTGAACTTGAAGGGCCTGATTGACTAAAATACTCTTTGCATTTCTTACCCTAATGCAaagtgcaatgttttatttatgatccTCCCCATGTAATCAAGTTATTGTTTAACACAGGGTGACAGCTCAGCCAAAGGGAAAAGGTGCATGTGTGTAATGCCATAAATACTTTTGATGCTGAaccaaatgaaatgcaaaatggcattatttccattttttctgGTCAAggatgtgagagagagaattccTAGTTGAATGCAAGCAAACTCATGGTCAAGGTGGACCTAAAAGCATTATTCCAAAACAGCACAAATGCAGCAAGCTTTTTGCAGACAACATGAGCAGTTTAAAATAGTAAGGTAAAGCCCACTTTAGAAACAGAACTATAAAGTAAAACTGCAGTCGTCACTCACAATAAGGCAGAATAAACCTTATGAATTGTCATATCTGTGAACATGTATAGCAAGTAACAATTAgcccttaaaaaaatacaacaccaTACTGTAGACacaagacattattattatttttttgtaattaggCCTCATacgtaaaacatattttaagcagatatttactgaaaagtatgcatttgtcattttgtttcttaGGAACAAGTAGTAGAGAttggtcattttctttttggtctAGAACAGAagatatttgtctttatttgtgtttataaatagaAAAGTTCAAAATCATAGCATAATGTATATTTCTTGAAATACAGGATTTTTGTGGAAATACTGGATTGCAATATTACCACCTCCAATACTATTAACCATTTGTGGGTTGTTCAGGTACTCATAATCAATGGTTCAAAGGTTGGAAATCAAACAAGAACATGGGTGTGACATGTTAATGAAGCGATCATGTCATGCTTCATTCttttacacattgtattttgtagAGGTTATCTTAAAGAGGAAACTGCAAAGTGTCACAGGTTTGTAATTCCAGATGGAAAACCCTTCACCATTTTGAATAGTAAAAACAGTTCCTGCATTGAGCTTTAATaggcatgttatttatttgtgtattgtttatgtCAGCTTGTTGTTAACAGGATTCTGTCCATACCAGTGAAGTTTCTCCTCagcccttttctttttccactgGCAAAAGAGCAACATTTTGAAAGTCTTTTGGAAGGTCTTGTTGCACAAGGCATAGCACATTGGGTTGACAGTACTATTGACGTAACAGAGCCAATAACCAAGATGCCAAAGGGACAGGGGGATGCATTCTGAGCAGAAGGTGGAAATGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU187110 lncRNA downstream 353369 6556705 ~ 6563305 (-) False G148692
TU187113 lncRNA downstream 353369 6557842 ~ 6563305 (-) True G148692
TU187002 lncRNA downstream 768388 6147929 ~ 6148286 (-) True G148610
TU186961 lncRNA downstream 904037 6004186 ~ 6012637 (-) False AMCG00000180
TU187241 lncRNA upstream 218686 7140362 ~ 7140968 (-) True G148801
TU187436 lncRNA upstream 837006 7758682 ~ 7758963 (-) True G148962
TU187485 lncRNA upstream 1034296 7955972 ~ 7956264 (-) True G149002
TU187523 lncRNA upstream 1382143 8303819 ~ 8304215 (-) True G149030
TU187566 lncRNA upstream 1607391 8529067 ~ 8583456 (-) True G149068
AMCG00000210 mRNA downstream 55246 6859006 ~ 6861428 (-) True AMCG00000210
AMCG00000206 mRNA downstream 244725 6670213 ~ 6671949 (-) True AMCG00000206
AMCG00000207 mRNA downstream 257472 6638579 ~ 6659202 (-) True AMCG00000207
AMCG00000205 mRNA downstream 292348 6599124 ~ 6624326 (-) True AMCG00000205
AMCG00000184 mRNA downstream 364344 6521027 ~ 6552330 (-) True AMCG00000184
AMCG00000194 mRNA upstream 1740 6923416 ~ 6927165 (-) True AMCG00000194
AMCG00000193 mRNA upstream 6321 6927997 ~ 6935187 (-) True AMCG00000193
AMCG00000230 mRNA upstream 290855 7212531 ~ 7225374 (-) True AMCG00000230
AMCG00000229 mRNA upstream 318088 7239764 ~ 7249352 (-) True AMCG00000229
AMCG00000231 mRNA upstream 339930 7261606 ~ 7268243 (-) True AMCG00000231
TU187117 other downstream 353369 6557842 ~ 6563305 (-) False G148692
TU187112 other downstream 353369 6558826 ~ 6563305 (-) False G148692
TU187026 other downstream 700233 6215756 ~ 6216441 (-) False AMCG00000190
TU187023 other downstream 706717 6209274 ~ 6209957 (-) False AMCG00000189
TU187005 other downstream 762408 6150720 ~ 6154266 (-) False AMCG00000168
TU187302 other upstream 439546 7361222 ~ 7362692 (-) True G148851
TU187495 other upstream 1174289 8095965 ~ 8106839 (-) True G149011
TU187735 other upstream 2113881 9035557 ~ 9045855 (-) False AMCG00000260
TU187888 other upstream 2566203 9487879 ~ 9488609 (-) True G149321
TU187910 other upstream 2618935 9540611 ~ 9541259 (-) True G149341

Expression Profile



Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00022317 True 886 mRNA 0.59 2 NC_007128.7 450956 ~ 456458 (+)
grasscarp (Ctenopharyngodon idella) CI01035621_00000372_00001066.mRNA True 707 mRNA 0.62 1 CI01035621 372 ~ 1078 (+)
mexican tetra (Astyanax mexicanus) TU104794 False 913 lncRNA 0.52 2 NC_035905.1 2474020 ~ 2477759 (-)