RNA id: AMCG00000205


Basic Information

Item Value
RNA id AMCG00000205
length 3482
RNA type mRNA
GC content 0.37
exon number 5
gene id AMCG00000205
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 6599124 ~ 6624326 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCACAGCTTGTGAAAAGGATGTGCAGATGGTGTGCAAGAACTCCTCGGAGGATCACCTACAGCCTTTTAAAGAGAAGATGGAGAGCTTCCTCTCTGTCGCCCAAAAAGAGCATGCTTTGGAGGAAGACCATCTGAAAACTGCCCAAAAAAGCTTTGATGACATGGTGGGCTTCTTTGGTTTGAAACCAAAGTCTGGGGAGAAGGACGTCCCCCCTAACTATGTCTTCATGCTGTGGTTCGAGTTCTGCAATGACTTCAAGAATACCTGGAAGCGGGAAAGCAAGAACATCTCAAAGGAGCGCCTGAAAGAGGCCCAGCAGTGTGTCAAAAAGATAACCGCGGAGAAGAAGGTGGAAACCAAGAAGATCAACCCTAACAGTCTGAAAGAACGATTGCGTCAGAAGGAAGCAAGTGTGTCCACCAGCTGAGAAAAAGAGCTGAGACGACGACTGAGAGACGGACTGAAAAGATGCTGCCCAGTCTTGTCCAGCTTCCAGCGCCTGAACATCCCCCGCTGTTAGCTCAACCCCCCGCCACCGGTCTGTTTCCGGGGTCCTGGAACTGACCACTCTCTATTCTCTCAACGACTCAACTAAAGCCTCCACCTATTCCAGAGCAGCGACCACATTCTTGTTTACAACAAGCGTGGGAAAAACGTGTTCATTTGCAAAAGGCAACCCTGGTGCGACAGAGTACGACAGGGAGGCGGGGTTTCTGTTACTTACACTAAAGCCAAAAATTATAGGGAACCTAGAGGCGCCAAACAAGCACTGGAATGTTTCAAATCCCCGATAGACACTGTTTCAGTCTGCAATAGAGCGATGCACTGGTGCTCCAGAATGAGATACATACTCTAAGCCTCACAGTGATCTTACTGTTTGCATTGTGAGTTCATGGTGCTCAGCGATTCCAAGCATGACAAATGCATATCTAAAGCTCTAAGTGCTTGTATAAGAAGCTCACTGGTGAAATGGGTATATTTTATTGAAGAATTCAAAAGGAAGTCAGTCCCAATGAAACTTATATTAATAGGTTATAGCTTGGGTTACCAGATGTCACATACATCACTGGAactgttttatatactttttaatgtgtttgaaCTGACCAATTCTTGCCACACGATCCCCAAATATAAGGAGCTAAGTTATGGGTTGTCTGAGATGTTTTAgggtattaaattaaatcctgGGATACCTTTGTAAAatgttcaggaaaaaaaaaaaagaatctcaAACATTGACTTTTTTCACCTCTTTTTGGAAGGGATAATATATGTTTCCAAAGTTATTAATTCATTGATTATTCAGGAAAGGATCCACCGCACTGATGGCATTTTGGATAAGTTCAAAAATTCACCAAATTTAACTGGGGGTCATGGTGAGGGAAATGAGACCGCACAGAAGTTTGGAGAGGGGCAGCTGGCTGTGGTATCGTACCACAGTGACTCTGACTGTGCTGGTATGGTGTGTGGCCAGGCAGCGGTCGCCCAGATTTAGCTCAGAGCTCTACAGCTCCCTTGATGACAATCAGAACGACGCTGGCAGGAGGAGAAGGAACTGGTTGGTTGTTTCCTGTACTTATATGTATGGGTTATGGCCACATTTGGACAAGCCAAAGTGAGGAAAGGTGTAGAGATAATACAGTCGATGCAccaaattcaaattatatatttttaaatacattgcagCAACAgtcattctttcaaaaaactcatgttttcaaataaatcagcatcataataaaatattcctTTGTCCCAAGCAGTCTCCTGCTTTATTAACACACTATCTGTCCCAAATGGTAATagataaaacatgtttattatgcTCATTCTGTTTGCCTCAGTCCTATGCAATGTTTTTCCTGAATTTACTGAGCATGTCCCAAATTTATACTAACAGTAATATAGTGTGCTCATATACAATGAAATTAATCATGTCAAATTttagaaaagtatatttatttaagagaaatatttgtattttaacacttaaaaagGTTCGAATTTTAGTTGTGTGTCTTAGAAAATAAGATATAGTAAAAGTTCCCTATATTTATAgggattaaaatatatttctatgtataaaaatatatattttatttctcaaaatcTGATGTTTGACCTTTgcaaaagtatttttgtatataatttcagCCCAAGAGTGAGAATAGTATCACAAAGGTTTATTCAGCAGTACCggaaatatgtattgtttttatttgttttgtgttttgttttcgtCACTGTcagtttaatgtaaaaaaacatgaaaatatccCATCTCacttagattttaaaaatttgcCTCCAAATACTAACATGCACCTTTAACATGTATAGAAACGTGTCAGTATGTTTCAGTTTATATGCTGTCACTACGatatgcattgttttcataaattaaaaatgtttgtcaaATTGTCACATCATACTCCATTTTTCTGAGTTTTTTTCGTCAGAACAGCAACATGAGAAGCTCTTCTGTGCATCTTATAGAATGCAATGTTATGTTCAGTTTCTTACAATTTCAAATTGGAGAAAATCACTTCAAGAccaattttaagaaatgtacgCAACATGAATATGAATTGATATGAATAGGCAGGACTTCCTAATAAATGAGTAGCAATATAAGAGAAAATGAACGATGGGTCTGCTGTAGTTATGTGTGTGAATGGTTAACCTGAAAATGGTTTTgggttttttattgtattttgcagaaaaCTTTTCGGGAAACGGGTGTGTCGTAGTGATATATTTAAGCAAATCATAATGAATGCTAAAATATAATGTTGGTATATAAAGCAGCAGTGTGGGGTGAGGCAGTGTCAGTCTGAATGGTGAAGGAGGTAACACTCAATGCTTTAATTTGCACTTATATATCTTCCTTTCCTCGTTCAGTTGCCCCactgcagatatatatataacaaagagatgtttattttttatcattcttGAAAGTCATTATGAAAACTTTGTTTCCTTAAATTATCTAAGAGAACTCAGTAAAACTTATCTTTGTGGTCTAAACCAAGCTTGCAAGGTGACGTGGATCTATCGTTTTCCCCCAGGTATTATTAATGTctcactttttcatttgtttatttttttttacaaatagtGATATCTATAAATATGTTCATGATACCCCAGTATCACAAAAACATTGTATGCATTGGTAAGAATGATATGAACCATATGAAAAGCAATATGTAAGTTGGGATAAATAGCTCAAGGTTTTTATGTGAACTTCAAGCCAATGTCTGACTGTATTGTAGTGCATGGGTGAACTTCATTACCTTCCACTCATTTGACTTAATTAGgataaatgtgtttcttttgcCATGTAACCATTTATACCAATAGACCATTCAAGACATTTGATCTGATGTTTAAATTCACATATCGGTGTTCTAGTTTATCGGTGAGCAAAAATGTAGGGGGAGAATGTATCCATGTAAGTAACTGAATAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187110 lncRNA downstream 35819 6556705 ~ 6563305 (-) False G148692
TU187113 lncRNA downstream 35819 6557842 ~ 6563305 (-) True G148692
TU187002 lncRNA downstream 450838 6147929 ~ 6148286 (-) True G148610
TU186961 lncRNA downstream 586487 6004186 ~ 6012637 (-) False AMCG00000180
TU186962 lncRNA downstream 586487 6004186 ~ 6012637 (-) True AMCG00000180
TU187241 lncRNA upstream 516036 7140362 ~ 7140968 (-) True G148801
TU187436 lncRNA upstream 1134356 7758682 ~ 7758963 (-) True G148962
TU187485 lncRNA upstream 1331646 7955972 ~ 7956264 (-) True G149002
TU187523 lncRNA upstream 1679493 8303819 ~ 8304215 (-) True G149030
TU187566 lncRNA upstream 1904741 8529067 ~ 8583456 (-) True G149068
AMCG00000184 mRNA downstream 46794 6521027 ~ 6552330 (-) True AMCG00000184
AMCG00000182 mRNA downstream 118824 6475441 ~ 6480300 (-) True AMCG00000182
AMCG00000191 mRNA downstream 310778 6285009 ~ 6288346 (-) True AMCG00000191
AMCG00000187 mRNA downstream 319580 6260620 ~ 6279544 (-) True AMCG00000187
AMCG00000188 mRNA downstream 340924 6244719 ~ 6258200 (-) True AMCG00000188
AMCG00000207 mRNA upstream 14253 6638579 ~ 6659202 (-) True AMCG00000207
AMCG00000206 mRNA upstream 45887 6670213 ~ 6671949 (-) True AMCG00000206
AMCG00000210 mRNA upstream 234680 6859006 ~ 6861428 (-) True AMCG00000210
AMCG00000192 mRNA upstream 292348 6916674 ~ 6921676 (-) True AMCG00000192
AMCG00000194 mRNA upstream 299090 6923416 ~ 6927165 (-) True AMCG00000194
TU187117 other downstream 35819 6557842 ~ 6563305 (-) False G148692
TU187112 other downstream 35819 6558826 ~ 6563305 (-) False G148692
TU187026 other downstream 382683 6215756 ~ 6216441 (-) False AMCG00000190
TU187023 other downstream 389167 6209274 ~ 6209957 (-) False AMCG00000189
TU187005 other downstream 444858 6150720 ~ 6154266 (-) False AMCG00000168
TU187302 other upstream 736896 7361222 ~ 7362692 (-) True G148851
TU187495 other upstream 1471639 8095965 ~ 8106839 (-) True G149011
TU187735 other upstream 2411231 9035557 ~ 9045855 (-) False AMCG00000260
TU187888 other upstream 2863553 9487879 ~ 9488609 (-) True G149321
TU187910 other upstream 2916285 9540611 ~ 9541259 (-) True G149341

Expression Profile