RNA id: AMCG00000210


Basic Information

Item Value
RNA id AMCG00000210
length 618
RNA type mRNA
GC content 0.55
exon number 4
gene id AMCG00000210
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 6859006 ~ 6861428 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACTCCTTCACCCAGTTTCGattttctgaagaaaaagaaTGGGAAGTGGATGCTTCAGCTAACAATCAGATGTCAGCTCTGTTTGTGGACTGCCAGTCTTTAGCCAGGTCGCTTCAGGAGCTGCCACTGCATGAGAGGTTGAACCTGGAAGCAGAACTGGTGCAGTTAGCGGTTCCGGTGGAGCTGCCCGTGGTGACGTTGAAGAACAAGCAGGACTCCAAGCTTGCTGGTCAGTTCGGCGTCCCCAGCCCCATGAAGACACCCCTGCTTGCGTCTGCTGCACACTCTGCTACCAACGCCGTCTCCAAGACTGTAGACGGGACATCGCTGGACTCCAAACCTCTGGAGGCGTCTCTCGGTGCCGCCCAGCCCCCAGCTGATGACATCGACGAGGATCTTGACATGCTGCTGAATTTAGAAACAGCCGTGCCAACTCCTCCAGACAGCGCTCCATCACGAGCGGACGAGCAGAACACAGCTGGAGTGAAAGCCCCCGCCCCGGAATTGATATCTGAAGGAGCAAAGGAAGAAGAGCCTCCCACTCCTGAAGCAGACATTCCCAAAAAGGACATCACGGAAGATGATCTGGAAGACTGGCTGGACAGCATGATTTCCTGA

Function

GO:

id name namespace
GO:0051301 cell division biological_process

KEGG:

id description
ko03040 Spliceosome
ko04120 Ubiquitin mediated proteolysis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187110 lncRNA downstream 295701 6556705 ~ 6563305 (-) False G148692
TU187113 lncRNA downstream 295701 6557842 ~ 6563305 (-) True G148692
TU187002 lncRNA downstream 710720 6147929 ~ 6148286 (-) True G148610
TU186961 lncRNA downstream 846369 6004186 ~ 6012637 (-) False AMCG00000180
TU187241 lncRNA upstream 278934 7140362 ~ 7140968 (-) True G148801
TU187436 lncRNA upstream 897254 7758682 ~ 7758963 (-) True G148962
TU187485 lncRNA upstream 1094544 7955972 ~ 7956264 (-) True G149002
TU187523 lncRNA upstream 1442391 8303819 ~ 8304215 (-) True G149030
TU187566 lncRNA upstream 1667639 8529067 ~ 8583456 (-) True G149068
AMCG00000206 mRNA downstream 187057 6670213 ~ 6671949 (-) True AMCG00000206
AMCG00000207 mRNA downstream 199804 6638579 ~ 6659202 (-) True AMCG00000207
AMCG00000205 mRNA downstream 234680 6599124 ~ 6624326 (-) True AMCG00000205
AMCG00000184 mRNA downstream 306676 6521027 ~ 6552330 (-) True AMCG00000184
AMCG00000182 mRNA downstream 378706 6475441 ~ 6480300 (-) True AMCG00000182
AMCG00000192 mRNA upstream 55246 6916674 ~ 6921676 (-) True AMCG00000192
AMCG00000194 mRNA upstream 61988 6923416 ~ 6927165 (-) True AMCG00000194
AMCG00000193 mRNA upstream 66569 6927997 ~ 6935187 (-) True AMCG00000193
AMCG00000230 mRNA upstream 351103 7212531 ~ 7225374 (-) True AMCG00000230
AMCG00000229 mRNA upstream 378336 7239764 ~ 7249352 (-) True AMCG00000229
TU187117 other downstream 295701 6557842 ~ 6563305 (-) False G148692
TU187112 other downstream 295701 6558826 ~ 6563305 (-) False G148692
TU187026 other downstream 642565 6215756 ~ 6216441 (-) False AMCG00000190
TU187023 other downstream 649049 6209274 ~ 6209957 (-) False AMCG00000189
TU187005 other downstream 704740 6150720 ~ 6154266 (-) False AMCG00000168
TU187302 other upstream 499794 7361222 ~ 7362692 (-) True G148851
TU187495 other upstream 1234537 8095965 ~ 8106839 (-) True G149011
TU187735 other upstream 2174129 9035557 ~ 9045855 (-) False AMCG00000260
TU187888 other upstream 2626451 9487879 ~ 9488609 (-) True G149321
TU187910 other upstream 2679183 9540611 ~ 9541259 (-) True G149341

Expression Profile