RNA id: AMCG00000218


Basic Information

Item Value
RNA id AMCG00000218
length 2847
RNA type mRNA
GC content 0.40
exon number 5
gene id AMCG00000218
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 7296829 ~ 7303937 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAGGGGTAGAGGCACAGTTTCACTGGCAGCATTTATCTGGGCAATTCTTGTAACATCACAGCAGTGTCAATGTACTGGTCTACATTTTCTTACCTAGAAGATTGGATACTACGTTCTTTAGGACTGGATCTACAGTTATGTTCAGGACCAAAATGGGATTGCAAAGGGACTTTGGAAAGTATTAGGCAGATTTTCATGATCTTCTAATAGGTACAGTGACTGCCAAGATGAGAGGAACCTGTCTGTAAATGAACATTGCTTGATTCTCATTATTTGATGCGTTGATTGTGCTGTACAGTCATGAGTTTGATTTATTGTTCTCAATCATggcagaaatgcatttaaagttgATCTAAAGTGGTTTAccaatgttttatgtaatgtaaatgtttcttttatttttatttttttacatttctgttttattttaccatCCCAATTTGGGATTGACGATACCATCAATTCACCTCATTGCTACAGTGCCTCAGTGGACAGAGGAGAACAACACACAGGTGTCGTTTCAAGGCAGGCATTGACAGGCCATCTACTTCTCCTCACCAGGTTTGTTTTGGCCTGTGTCTTTAAAGGGTGCCACCAGGGAGGATTAAACAGCCAAGATGGACAGCATCATGAACTACACAGGGGATCCCTTCAATGTCACACTGTCCAACTTCACAGAAGTGTTCCAGTTGCCTTTTTCGCCAGTCGTGGACAAGGTCATTGGTGCCATAACCATAATCATCCTCTTCATCACCATGATCTCCCTGGGCTGCACCATGGAGATCTCCAAGATCAAAGAACATTTCCTGAAGCCCAAAGGTGTGGCCATTGCTGTAATGGCTCAGTACGGCGTCATGCCCCTGACGGCCTTTGCGATGGCTAAAGTCTTTCGGCTCGGACCCATCGAAGCAGTGACTGTGCTCATCTGCGGCTGCTGTCCCGGAGGAAACCTGTCTAACATCTTCGCCTTGGCTCTGAACGGAGACATGAACCTCAGTATCGTGATGACCACATGTTCCACAGTGCTGGCCTTGGGTATGATGCCACTCCTTCTGTACCTGTACTGCCATGGCTTCTCTGATGTGGAAAACGCTGTGCCCTACGGAGGCATCACCATCGCCCTGGTCATGACACTGCTGCCCTGTGCCATTGGGATAGCCATCAATGCCCGCGTGCCTCGCTACTCAAAGATCATTGTGCGGGTGGGTCTGAGCATAATGCTAATAGCCTCTGTGGCAATTGGCATCCTCTCTGGCATAACCATTGGCAGTACTATCTGGATAGTCCTGTCTCCTTCTCTGTTGGCCACGTCTGCTCTAATGCCTCTCACTGGGTTCCTACTTGGCTACTTGTTGTCCACGCTATTCCGTCTCAATGAACAGTGTAAAAGGACAGTCTCCATGGAGACTGGCTGTCAGAATATCCAGCTATGCGCCACTATTTTAAAAGTGGCATTCCCACTAGAAGTCATTGGACCCCTGTACTTGTTTCCACTCATCTACATCATTTTCCAAATTGGGGAGGCATTTATCTTAATCTTGCTCTATAGGTGTTACCAAACGCTGTGGCCTCCATCACATGtcCCAGAGAAAATTCTATATATTTCTGTGGACAAAAAAGTAGAAGTGAAACTGGATCAAGACAAGGGGACGCTGTACTGAAGATCCCAAATGAAAAACTGCAGAGAAACGTGCAAGGGGCTTGAGTAAATAGCAACTCCCAAAGAGATTTCAATTGCAATCTGTTTGAAGGGGAGAGACTTATGTGTGCAGGGCAAATCCTGAGTGGATCAGACTAATACTTACAAGTGCAGTGTTTAATGGCACTGATCTTTCCAAATCTTCAGAATCAAAACTTGCATCAAAGATTATCTGAAGTAATCAAATTATGTGTGATGTTGCTATAATGCTTCAACACCACTACGATTAACTTTTACCAAAACATGACATGGTATATGGACTGGTTATGTTCGTTTTACcatgaaaaaatgttttgttatatctgcatacaatacaaatactgaattcatttaaaaccataatgTAACACACAATGTACTCATATGACACCAGAAACTGTGATTTGACTCCTCATACTCATACTGTGGAAATGTATCGCGTAGTTCGAATCATCAATAAGGACTTTGATCTGTACCACTTAATGTAGGCAAAATCTTTTGATATAAAATTCATAAGCAACCTTTTTAGCTTTCTCTTCTGTATGGCATTACTCAAATAaccatgtttatatatttttttttatcaaggaACCTAGTGTAGAAAATATGCATTGCCTTAAGATATGTCTCAAACAGGGCAGTGTGGAAAATAGGAATGGTCAAATCACAAGGAAAAGGgagcaatataaaaaaataataataaaaaataaaaaatgaatgcctCATGTGTTGGTTTGAAAGTGTAATCACTGAAAGTAATATTTGGTTAAATCCCAGTTTTGGTATGAAAGCCCAATAGTGCTTGAGCAAAAATGCAGATGTTAAAATTCAGTACTGAGTGTATATTATCAAAGTATAAGAATAGAAACACCCTTTCACATGActttttcacaaacaaaaacacttgcaTGTAATATAGATTAAATCGTGATTAAGAGGAAGGTAACTAAGAATGATCTTTGTCAATGTAACACAATTTACACAGGACCTCTTATGTTCAGAATTGCCACCAATgtgttacacaaacaaacaaaaatggattAATGCAttggattatttttaattgttgaaatCACAATGCTTCTGATCCAATAACTACATACAGATGTATATCAGATGCTGAAAGttgcacattttctgtttttgcgCACTGTAACCTAATTATAA

Function

GO: NA

KEGG:

id description
K14341 SLC10A1, NTCP; solute carrier family 10 (sodium/bile acid cotransporter), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187241 lncRNA downstream 155861 7140362 ~ 7140968 (-) True G148801
TU187110 lncRNA downstream 733524 6556705 ~ 6563305 (-) False G148692
TU187113 lncRNA downstream 733524 6557842 ~ 6563305 (-) True G148692
TU187002 lncRNA downstream 1148543 6147929 ~ 6148286 (-) True G148610
TU186962 lncRNA downstream 1284192 6004186 ~ 6012637 (-) True AMCG00000180
TU187436 lncRNA upstream 454745 7758682 ~ 7758963 (-) True G148962
TU187485 lncRNA upstream 652035 7955972 ~ 7956264 (-) True G149002
TU187523 lncRNA upstream 999882 8303819 ~ 8304215 (-) True G149030
TU187566 lncRNA upstream 1225130 8529067 ~ 8583456 (-) True G149068
TU187573 lncRNA upstream 1269145 8573082 ~ 8575086 (-) True G149075
AMCG00000231 mRNA downstream 28586 7261606 ~ 7268243 (-) True AMCG00000231
AMCG00000229 mRNA downstream 47477 7239764 ~ 7249352 (-) True AMCG00000229
AMCG00000230 mRNA downstream 71455 7212531 ~ 7225374 (-) True AMCG00000230
AMCG00000193 mRNA downstream 361642 6927997 ~ 6935187 (-) True AMCG00000193
AMCG00000194 mRNA downstream 369664 6923416 ~ 6927165 (-) True AMCG00000194
AMCG00000219 mRNA upstream 22007 7325944 ~ 7336883 (-) True AMCG00000219
AMCG00000212 mRNA upstream 278176 7582113 ~ 7585199 (-) True AMCG00000212
AMCG00000236 mRNA upstream 290322 7594259 ~ 7619197 (-) True AMCG00000236
AMCG00000237 mRNA upstream 349506 7653443 ~ 7662995 (-) True AMCG00000237
AMCG00000222 mRNA upstream 382004 7685941 ~ 7689956 (-) True AMCG00000222
TU187117 other downstream 733524 6557842 ~ 6563305 (-) False G148692
TU187112 other downstream 733524 6558826 ~ 6563305 (-) False G148692
TU187026 other downstream 1080388 6215756 ~ 6216441 (-) False AMCG00000190
TU187023 other downstream 1086872 6209274 ~ 6209957 (-) False AMCG00000189
TU187005 other downstream 1142563 6150720 ~ 6154266 (-) False AMCG00000168
TU187302 other upstream 57285 7361222 ~ 7362692 (-) True G148851
TU187495 other upstream 792028 8095965 ~ 8106839 (-) True G149011
TU187735 other upstream 1731620 9035557 ~ 9045855 (-) False AMCG00000260
TU187888 other upstream 2183942 9487879 ~ 9488609 (-) True G149321
TU187910 other upstream 2236674 9540611 ~ 9541259 (-) True G149341

Expression Profile