RNA id: AMCG00000222


Basic Information

Item Value
RNA id AMCG00000222
length 2391
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00000222
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 7685941 ~ 7689956 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCAACTAGAGCCGTGAAAGCAACCACAGCTTGCTAAACCCATGGTAGACAACAGGGACACTGACCACTGTGGAGGCACGCATCCACCCCGGGAATCTACCTGCACTGCTTTGAAACGCTTTGTATCCTCTATCCCAGCAGTAAGTCGGACTATATTGGTGAGAAATGCCACCACAAATGGAATATATTTGCGATCAGAGCCGGGTGCCCTCTTTGCCCCCTTCCCCCGACCTGCACAGCGCGGAGCCCGCGGTGAAGTGCGTGTTGGTGGGGGACGGGGCTGTTGGGAAGACCAGTCTGATTGTGAGCTACACTACCAATGGATACCCAACGGAATACCAGCCCACTGCATTTGACATCTTCTCTGGACTTGTGCAGGTCGATGGTACTCCTGTGCGAATCCAGCTCTGTGACACAGCAGGGCAGGAAGAGTTTGACCGCCTCCGATCGCTCTGCTACACGGGAACCGATGTCTTCGTGGTGTGTTTCAGCGTGGTCAACCCATCCTCCTTTCAGAACATAAGCGAGAAATGGATCCCTGAAATCCGGGCCTGTAACCCCACGTCTCCCATCATCCTTGTCGGAACACAATCCGACCTCCGCCACGATGTCAACGTTCTCATTAACCTGGACCGGTGTAAAGTCAAACCCGTGTTAAAATCTCGAGCTCGAAGTCTGGCGGAGAAGATCCGGGCACAGGATTACATTGAATGCTCGGCTTTGACTCAGAAGAACCTGAAGGAGGTCTTTGACACCGCCATCTTTGCTGCAATCAAACACAAGGCCCgaaaggaaaagaaactgaaaatgtccaCGGACCGTACAAAgaccttttcaaaatgtggGTGGAAgaagtttttctgttttgtctgaCTTCATAAGACAAAACTGgacttaatttattaacttaCCAGTGTGTAAAATAACACATGAACCCCAGCAAGTCTTTGATCCAGCGTGGATCTAAGTGAAGGTATAGCCATGGAGTTGTGTGCTCTGGAGTTTGTGTTTCTCCTTGTCTGATGGCTTAAGTGCATGAAAATGGATTCATTTTCAATGCAAAGAAAGGGCAAATGAGTCTGGCCTTTGACTCATAATTTGTCAGAGTTTCTGTTTGTGAAGTGTATAGGTCAGGGTATTCAAAGGACAATGCACAAGGCCCACTTTGGAAAGTCTTCTCACAATCCTGTATCATTATGCTGAGTATTTAAAGGGTTGCACATTTATAGCTCATCAACTGGAAAAAAGTGAAAGCATTACCGTTACCCACACTACTATAAAATCAGAAACAGTTCCAGCTATACACAAGCGGTTTGCAAAATGCTTTAAGACACAAGATAGTATTTATACCATGATCACTTGTAATTTTGGATTAGCATAGGGGATTCCTAAATCATCCTGATTATTGTCATTAATGAAACACTACTTTTATCATGCTGCAACTGACTCTTAACTGGACTAAACAGAAGAAGGTTTTTGAGGAATTTTCACATCTGATTTAGAAGAATTGTTCTATTTCTTTGTCCAGGCAGATTGTGTttctcactatatatatttaacagtaTCAGATCTACTTTCTGACTGATTGCACTTTAGCCTTTAAAGTGGTGATGCACGGCAAGTCCTGAGTGAGATTAACAAAGTAATCATTTGTGACTCACGGCTGTGCAAAAATCATGGGTAAAATATTCCTAAAATTACTTTTAGTTTTCTGTAGTTAAATCTTAATCCTTTAGTCACATATAATGAAGGCATCTGCAATAGTTTCAAACTGCAACAACaactataataattataaggAAAACGGTTTAAAGTTATATTGCACATGATAatgctaatttatttgaaaataatacattatcataGTGTCTCTGTAGTGAAGAATATCTAAGCCATCCATAAACCGAATGTAATACTGTAGTGAAGCAGACATTTAAATTGAGCCACAGATTTTTGCTAAGGGTAACAAAAACCCTTATTCTGAAGGATTCAAATCTGCATCTTAGTCTTTCTCTTGTGCTTAAGATTTTACATTGTAATATCCTGGGGACCTAATACTGCTTTAATGCTTCTTGTGGAAGCctttttataattgtttgttgtttaagcAAACCCTATTAGTTATATAAATGGGTttgcaattcatattttttttacccttttGATTATCAGAGAACAAACTGTTTGTGCACTGTAAGTgatctgtctgtatgtgtttatgtgagaCATTTGACATCTCTTTGTAATTGACTACAGCTCTCAATGATCATTTGTCATGTACAGTAGTAGGCATTTTATCTGCCAATGATCTACTATCGTGGCTTtgattatttcagtttcaaaccagttcattttttatgaagtgctgaaaaataaattatttaattacta

Function

GO: NA

KEGG:

id description
K07866 RHOV, WRCH2; Ras homolog gene family, member V

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187241 lncRNA downstream 544973 7140362 ~ 7140968 (-) True G148801
TU187110 lncRNA downstream 1122636 6556705 ~ 6563305 (-) False G148692
TU187113 lncRNA downstream 1122636 6557842 ~ 6563305 (-) True G148692
TU187002 lncRNA downstream 1537655 6147929 ~ 6148286 (-) True G148610
TU186962 lncRNA downstream 1673304 6004186 ~ 6012637 (-) True AMCG00000180
TU187436 lncRNA upstream 68726 7758682 ~ 7758963 (-) True G148962
TU187485 lncRNA upstream 266016 7955972 ~ 7956264 (-) True G149002
TU187523 lncRNA upstream 613863 8303819 ~ 8304215 (-) True G149030
TU187566 lncRNA upstream 839111 8529067 ~ 8583456 (-) True G149068
TU187573 lncRNA upstream 883126 8573082 ~ 8575086 (-) True G149075
AMCG00000237 mRNA downstream 22946 7653443 ~ 7662995 (-) True AMCG00000237
AMCG00000236 mRNA downstream 66744 7594259 ~ 7619197 (-) True AMCG00000236
AMCG00000212 mRNA downstream 100742 7582113 ~ 7585199 (-) True AMCG00000212
AMCG00000219 mRNA downstream 349058 7325944 ~ 7336883 (-) True AMCG00000219
AMCG00000218 mRNA downstream 382004 7296829 ~ 7303937 (-) True AMCG00000218
AMCG00000223 mRNA upstream 54625 7744581 ~ 7746668 (-) True AMCG00000223
AMCG00000225 mRNA upstream 56867 7746823 ~ 7753566 (-) True AMCG00000225
AMCG00000224 mRNA upstream 70674 7760630 ~ 7768260 (-) True AMCG00000224
AMCG00000226 mRNA upstream 151459 7841415 ~ 7847344 (-) True AMCG00000226
AMCG00000239 mRNA upstream 196534 7886490 ~ 7892150 (-) True AMCG00000239
TU187302 other downstream 323249 7361222 ~ 7362692 (-) True G148851
TU187117 other downstream 1122636 6557842 ~ 6563305 (-) False G148692
TU187112 other downstream 1122636 6558826 ~ 6563305 (-) False G148692
TU187026 other downstream 1469500 6215756 ~ 6216441 (-) False AMCG00000190
TU187023 other downstream 1475984 6209274 ~ 6209957 (-) False AMCG00000189
TU187495 other upstream 406009 8095965 ~ 8106839 (-) True G149011
TU187735 other upstream 1345601 9035557 ~ 9045855 (-) False AMCG00000260
TU187888 other upstream 1797923 9487879 ~ 9488609 (-) True G149321
TU187910 other upstream 1850655 9540611 ~ 9541259 (-) True G149341
TU187980 other upstream 2066425 9756381 ~ 9766794 (-) True G149395

Expression Profile