RNA id: AMCG00000223


Basic Information

Item Value
RNA id AMCG00000223
length 1418
RNA type mRNA
GC content 0.45
exon number 3
gene id AMCG00000223
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 7744581 ~ 7746668 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCGCAGCACAACAAACACACGTGTTGGGATCGTCCGGATTATAAACGCGCCGCAGCCGCCAGTCCTCCAGTGCGAGTTAGTCAATTCAAATAGGGTGTCAGGCTATATTGGATCAATGGACCGACTGAAAACGAGTTATAATCTATCTCCAGAATACACACGTCTTCgagataataaatatatatgaaaaaaatggAAGCAAGACGGATTATATAAAGACGGCAGCATCTCTAATGTCGGCATCGCAGAGTGAAACGGGAACTGCAATATTGCGTCAGAAAACCAGTACCAACTCCAGTCTTAATAGAAATCTACCCATTTAAACTGCTCTTCTATACCAGTCtcaacatgaaaataaaagatatCACGACAGCGAAATCCAGTTTGTGGATCTTCGGGTACGGTTCCCTGGTTTGGAAACCCGACTTCCAGTTCAGCAGAAGCAAGGTCGGGTACATCCAGGGCTACAAGAGACGGTTCTGGCACGGAGACAACTTCCATCGAGGCAATAATGACATGCCTGGCCGGGTGGTGACGCTAGTGGAAGACCATGACGCTTGTACATATGGGATAGCCTACGAGGTGACTGGCAGCCAGATCCAGGAGTCCCTTAAGTACCTGAACGTGAGGGAGAACGTCCTGGGCGGCTACGTGACTAAATTGGTGGAGTTCATCCCCCGTGCCGACGAGCCCTCGGTCCTGGCCCTGGTTTACATCGCCACTTCGGACAATCCCATCTACTTGGGACCCGCCACCTCAGAGGAGATCGCTGCTCAGATCGTCGTCAGCAGTGGCAAAACCGGACACAATGTCGAGTACCTCTTCCGGCTGGCAGATTTCATGAGGCTCTACTGCCCTGAGGTGGAGGATGACCATTTATTCTCCATTGAAGCTGCCACACTGTCCCTAATGCCATACTAGTCGAGTCAAAAACGGTCAATGCCTGTGCTTTGCATCTGAAAAtcgcctgttgttgctgtggcCAAAACCATGACTGCCACACTTCTGACaccataatgataataatctgACAAAATAAACAGGCTCCAAGCACCAGGCTCACTGTATTAGTGTTATTGTTCCCTGTCATGCTAAGTATTCACCTGTGAACAATGTTGTGGCATTTTAACACTGTGGTCCATTATGATGTAACACTATATTATCCATTTAAACGGTGCAAAGGGAAGCATGTGATTGTAATGGTtgtctttttacatttgttttttaaacataaaacattgcGGGCATTGTGCAATAGTAGTTGTATTAATGTTGATTTGCTGCTAAGATGAAGATGATTGTGAACCAACAAAATAAAGTCTTGTTTATGTTACCTGCCAGTAACTATCTGATACCTTTGTtgtaaaaggaaatatttatttttatatgtaaacttcaataaaatgtaaagtaaaga

Function

GO: NA

KEGG:

id description
K07232 CHAC, chaC; glutathione-specific gamma-glutamylcyclotransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187241 lncRNA downstream 603613 7140362 ~ 7140968 (-) True G148801
TU187110 lncRNA downstream 1181276 6556705 ~ 6563305 (-) False G148692
TU187113 lncRNA downstream 1181276 6557842 ~ 6563305 (-) True G148692
TU187002 lncRNA downstream 1596295 6147929 ~ 6148286 (-) True G148610
TU186962 lncRNA downstream 1731944 6004186 ~ 6012637 (-) True AMCG00000180
TU187436 lncRNA upstream 12014 7758682 ~ 7758963 (-) True G148962
TU187485 lncRNA upstream 209304 7955972 ~ 7956264 (-) True G149002
TU187523 lncRNA upstream 557151 8303819 ~ 8304215 (-) True G149030
TU187566 lncRNA upstream 782399 8529067 ~ 8583456 (-) True G149068
TU187573 lncRNA upstream 826414 8573082 ~ 8575086 (-) True G149075
AMCG00000222 mRNA downstream 54625 7685941 ~ 7689956 (-) True AMCG00000222
AMCG00000237 mRNA downstream 81586 7653443 ~ 7662995 (-) True AMCG00000237
AMCG00000236 mRNA downstream 125384 7594259 ~ 7619197 (-) True AMCG00000236
AMCG00000212 mRNA downstream 159382 7582113 ~ 7585199 (-) True AMCG00000212
AMCG00000219 mRNA downstream 407698 7325944 ~ 7336883 (-) True AMCG00000219
AMCG00000225 mRNA upstream 155 7746823 ~ 7753566 (-) True AMCG00000225
AMCG00000224 mRNA upstream 13962 7760630 ~ 7768260 (-) True AMCG00000224
AMCG00000226 mRNA upstream 94747 7841415 ~ 7847344 (-) True AMCG00000226
AMCG00000239 mRNA upstream 139822 7886490 ~ 7892150 (-) True AMCG00000239
AMCG00000240 mRNA upstream 151649 7898317 ~ 7914432 (-) True AMCG00000240
TU187302 other downstream 381889 7361222 ~ 7362692 (-) True G148851
TU187117 other downstream 1181276 6557842 ~ 6563305 (-) False G148692
TU187112 other downstream 1181276 6558826 ~ 6563305 (-) False G148692
TU187026 other downstream 1528140 6215756 ~ 6216441 (-) False AMCG00000190
TU187023 other downstream 1534624 6209274 ~ 6209957 (-) False AMCG00000189
TU187495 other upstream 349297 8095965 ~ 8106839 (-) True G149011
TU187735 other upstream 1288889 9035557 ~ 9045855 (-) False AMCG00000260
TU187888 other upstream 1741211 9487879 ~ 9488609 (-) True G149321
TU187910 other upstream 1793943 9540611 ~ 9541259 (-) True G149341
TU187980 other upstream 2009713 9756381 ~ 9766794 (-) True G149395

Expression Profile